RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 LPPQ93052 612 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 C11orf24Q96F05 449 aaPredicted RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 ABHD1Q96SE0 405 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 TRIM62Q9BVG3 475 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 POLDIP3Q9BY77 421 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 TSR3Q9UJK0 312 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 AKT3Q9Y243 479 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 EXOSC1Q9Y3B2 195 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 C1orf226A1L170 272 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 C2orf78A6NCI8 922 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 NBNO60934 754 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 NFATC1O95644 943 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 EIF4EP06730 217 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 CPN1P15169 458 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 EDNRBP24530 442 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 GDF5P43026 501 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 NR0B1P51843 470 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 XKR6Q5GH73 641 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 IDNKQ5T6J7 187 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 GSG1LQ6UXU4 331 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 TMUB2Q71RG4 321 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 FAM71CQ8NEG0 241 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 OR4K2Q8NGD2 314 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 HASPINQ8TF76 798 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 HMCESQ96FZ2 354 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 EGFL8Q99944 293 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 SEMA3CQ99985 751 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 CHIAQ9BZP6 476 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 POLR1EQ9GZS1 481 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 C20orf85Q9H1P6 137 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 MTG2Q9H4K7 406 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 HMX1Q9NP08 348 aaPredicted RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 SEMA3GQ9NS98 782 aa13.09□□□□□ -0.31
HDAC1-206ENST00000476391 MRTO4Q9UKD2 239 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 FNDC3AQ9Y2H6 1198 aaKnown RBP13.09□□□□□ -0.31
HDAC1-206ENST00000476391 RAB19A4D1S5 217 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 CARNS1A5YM72 827 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 HHLA1C9JL84 531 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 H3BN98 237 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SIX6O95475 246 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SRPRAP08240 638 aaKnown RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SELLP14151 372 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 COX7A2P14406 83 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 CDKN1CP49918 316 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 DGKEP52429 567 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 GAS1P54826 345 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SEC61A1P61619 476 aaKnown RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 DYRK1AQ13627 763 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 HTR4Q13639 388 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SERTAD2Q14140 314 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 GANABQ14697 944 aaKnown RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SYT14P1Q58G82 188 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 WDR53Q7Z5U6 358 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 NAGSQ8N159 534 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ORAI1Q96D31 301 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 TCEAL4Q96EI5 215 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 CINPQ9BW66 212 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SLC6A20Q9NP91 592 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ASB6Q9NWX5 421 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 KCND3Q9UK17 655 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 OR6C75A6NL08 312 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 TLX2O43763 284 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 PCDH7O60245 1069 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 RAD1O60671 282 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SOX14O95416 240 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 IGHV2-70P01814 119 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SPP1P10451 314 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ACP2P11117 423 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 MTNR1BP49286 362 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 VEGFCP49767 419 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 MMP15P51511 669 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 LGALS3BPQ08380 585 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 CPSF6Q16630 551 aaKnown RBP eCLIP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 PSAPL1Q6NUJ1 521 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 NOXRED1Q6NXP6 359 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 NCEH1Q6PIU2 408 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ZC3H14Q6PJT7 736 aaKnown RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 SVBPQ8N300 66 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 LINC01465Q8N7H1 131 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 GANCQ8TET4 914 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 GTF3C2Q8WUA4 911 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 APIPQ96GX9 242 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ANKRD19PQ9H560 264 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 C11orf49Q9H6J7 331 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 ZNF334Q9HCZ1 680 aaPredicted RBP13.08□□□□□ -0.32
HDAC1-206ENST00000476391 NIT2Q9NQR4 276 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 MGAT4CQ9UBM8 478 aa13.08□□□□□ -0.32
HDAC1-206ENST00000476391 A0A1B0GUH1 482 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 MOXD2PA6NHM9 499 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 PRR23D1E9PI22 279 aaPredicted RBP13.07□□□□□ -0.32
HDAC1-206ENST00000476391 PRAMEF2O60811 474 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 FZD7O75084 574 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 OR2A4O95047 310 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 PRR23D2P0DMB1 279 aaPredicted RBP13.07□□□□□ -0.32
HDAC1-206ENST00000476391 SYN1P17600 705 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 AMD1P17707 334 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 SPI1P17947 270 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 ACADLP28330 430 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 KCNJ3P48549 501 aa13.07□□□□□ -0.32
HDAC1-206ENST00000476391 STARP49675 285 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms