RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ITGB2P05107 769 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 SNRPB2P08579 225 aaKnown RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 CAPN3P20807 821 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 GPR143P51810 404 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 POLE2P56282 527 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 RNF4P78317 190 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 PRR5P85299 388 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 LRRC74AQ0VAA2 488 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 TP53BP2Q13625 1128 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 MYBPC3Q14896 1274 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 MAPRE2Q15555 327 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 AGAP7PQ5VUJ5 663 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 B3GNTL1Q67FW5 361 aaPredicted RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 SLC2A7Q6PXP3 512 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 MSANTD1Q6ZTZ1 278 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 C9orf40Q8IXQ3 194 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 SIMC1Q8NDZ2 872 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 NUP43Q8NFH3 380 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 FDCSPQ8NFU4 85 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 C16orf52Q8NHV5 167 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 CTHRC1Q96CG8 243 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 ERP27Q96DN0 273 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 CCDC115Q96NT0 180 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 AGAP4Q96P64 663 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 INPP5KQ9BT40 448 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 SLC25A23Q9BV35 468 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 CDCP1Q9H5V8 836 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 CXorf36Q9H7Y0 433 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 LIN28AQ9H9Z2 209 aaKnown RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 SIRT3Q9NTG7 399 aaPredicted RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 TMEM45AQ9NWC5 275 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 PRODH2Q9UF12 536 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 ZNF639Q9UID6 485 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 TEKT2Q9UIF3 430 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 BTNL2Q9UIR0 455 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 VPS4AQ9UN37 437 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 CFL2Q9Y281 166 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 RNF103-CHMP3A0A140T963 221 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 C2orf92A0A1B0GVN3 265 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 UPK1AO00322 258 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 PLOD2O00469 737 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ANGPT2O15123 496 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 NME6O75414 186 aaPredicted RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 CLPSP04118 112 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 GSNP06396 782 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 CD1EP15812 388 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 S1PR1P21453 382 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 CHI3L1P36222 383 aaPredicted RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 CCT3P49368 545 aaKnown RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 DUSP8Q13202 625 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 NNATQ16517 81 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 FHL5Q5TD97 284 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ABHD17BQ5VST6 288 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 TCTN3Q6NUS6 607 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ANGPTL8Q6UXH0 198 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 LINC00696Q6ZRV3 163 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ZNF621Q6ZSS3 439 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 SNX32Q86XE0 403 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 CLEC4FQ8N1N0 589 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 OR2L13Q8N349 312 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ZNF615Q8N8J6 731 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ANKS4BQ8N8V4 417 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 OR56A1Q8NGH5 318 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 OR5L2Q8NGL0 311 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 FBXO30Q8TB52 745 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 JADE3Q92613 823 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 WWTR1Q9GZV5 400 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 ABI3Q9P2A4 366 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 LEF1Q9UJU2 399 aaPredicted RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 C19orf53Q9UNZ5 99 aaPredicted RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 HEMK1Q9Y5R4 338 aaPredicted RBP13.89□□□□□ -0.19
NUP54-213ENST00000513352 CFAP47Q6ZTR5 3102 aa13.89□□□□□ -0.19
NUP54-213ENST00000513352 DYTNA2CJ06 578 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 WWP2O00308 870 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 SCN2BO60939 215 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 ALPPP05187 535 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 FAM87AP0C7U9 286 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 ADSLP30566 484 aaPredicted RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 SOX18P35713 384 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 CDKN2CP42773 168 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 ST13P50502 369 aaKnown RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 GAB1Q13480 694 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 EBPQ15125 230 aaKnown RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 ZNHIT3Q15649 155 aaPredicted RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 MEP1AQ16819 746 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 MMEL1Q495T6 779 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 CRB2Q5IJ48 1285 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 TMEM64Q6YI46 380 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 C16orf47Q6ZP98 133 aaPredicted RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 RPS19BP1Q86WX3 136 aaKnown RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 TRIML2Q8N7C3 387 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 OR8K3Q8NH51 312 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 SFXN5Q8TD22 340 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 MOAP1Q96BY2 351 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 FAM120BQ96EK7 910 aaKnown RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 ZNF354BQ96LW1 612 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 MS4A4EQ96PG1 132 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 SLC35A5Q9BS91 424 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 YIPF4Q9BSR8 244 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 ITPAQ9BY32 194 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms