RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 METTL6Q8TCB7 284 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 MZB1Q8WU39 189 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 DIO2Q92813 273 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 LURAP1Q96LR2 239 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 ZNF681Q96N22 645 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 EPB41L4BQ9H329 900 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 FAM215AQ9Y5M1 114 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 ZNF780BQ9Y6R6 833 aa16.29■□□□□ 0.2
HDDC3-201ENST00000330334 CCDC151A5D8V7 595 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 ENO1P06733 434 aaKnown RBP16.28■□□□□ 0.2
HDDC3-201ENST00000330334 CAPN3P20807 821 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 ENDOUP21128 410 aaKnown RBP16.28■□□□□ 0.2
HDDC3-201ENST00000330334 GPX3P22352 226 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 ABCD3P28288 659 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 FBXW4P57775 412 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 DCAF7P61962 342 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 GALNT18Q6P9A2 607 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 PACS2Q86VP3 889 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 SAMD14Q8IZD0 417 aaPredicted RBP16.28■□□□□ 0.2
HDDC3-201ENST00000330334 ERP27Q96DN0 273 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 CCDC126Q96EE4 140 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 HSPBAP1Q96EW2 488 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 C11orf24Q96F05 449 aaPredicted RBP16.28■□□□□ 0.2
HDDC3-201ENST00000330334 ZNF597Q96LX8 424 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 SIRT5Q9NXA8 310 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 MAT2BQ9NZL9 334 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 SPRR3Q9UBC9 169 aa16.28■□□□□ 0.2
HDDC3-201ENST00000330334 PHF3Q92576 2039 aaKnown RBP16.28■□□□□ 0.2
HDDC3-201ENST00000330334 FOXO6A8MYZ6 492 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 H3BQF6 201 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 ACOX3O15254 700 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 ERAL1O75616 437 aaKnown RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 ESRRBO95718 433 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 ABCB1P08183 1280 aaPredicted RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 RHOXF2BP0C7M4 288 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 PYGBP11216 843 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 MSX1P28360 303 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 SOX18P35713 384 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 FEN1P39748 380 aaKnown RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 CASP3P42574 277 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 GSTM5P46439 218 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 SPIN4Q56A73 249 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 FAM111BQ6SJ93 734 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 TMEM64Q6YI46 380 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 MEX3BQ6ZN04 569 aaKnown RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 SH2D5Q6ZV89 423 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 NUP54Q7Z3B4 507 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 CCDC71Q8IV32 467 aaPredicted RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 MMP21Q8N119 569 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 KLHL29Q96CT2 875 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 CNRIP1Q96F85 164 aaPredicted RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 RILPQ96NA2 401 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 HBEGFQ99075 208 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 RHOXF2Q9BQY4 288 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 ACPTQ9BZG2 426 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 SHCBP1LQ9BZQ2 653 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 BRINP2Q9C0B6 783 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 NXF5Q9H1B4 397 aaKnown RBP16.27■□□□□ 0.2
HDDC3-201ENST00000330334 UBQLN3Q9H347 655 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 EXO5Q9H790 373 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 PPCSQ9HAB8 311 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 PRODH2Q9UF12 536 aa16.27■□□□□ 0.2
HDDC3-201ENST00000330334 POLQO75417 2590 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 AHRRA9YTQ3 701 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 PPM1BO75688 479 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 BCAS2O75934 225 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 CBX7O95931 251 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 HPNP05981 417 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 DRD5P21918 477 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 HMOX2P30519 316 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 PPICP45877 212 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 ZFP36L2P47974 494 aaKnown RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 SNTA1Q13424 505 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 HEPACAMQ14CZ8 416 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 TCHHL1Q5QJ38 904 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 C1orf185Q5T7R7 199 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 RIPPLY2Q5TAB7 128 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 FNDC7Q5VTL7 733 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 ZNF675Q8TD23 568 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 TMEM41AQ96HV5 264 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 LCORQ96JN0 433 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 JSRP1Q96MG2 331 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 UCK2Q9BZX2 261 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 SLC24A3Q9HC58 644 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 MCCC2Q9HCC0 563 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 NPDC1Q9NQX5 325 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-201ENST00000330334 TNFRSF10DQ9UBN6 386 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 HEY2Q9UBP5 337 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 UTS2RQ9UKP6 389 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 DTX4Q9Y2E6 619 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 DLGAP4Q9Y2H0 992 aa16.26■□□□□ 0.19
HDDC3-201ENST00000330334 NINQ8N4C6 2090 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 GOLGA8RI6L899 631 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 TO15178 435 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 CHN1P15882 459 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 KRT15P19012 456 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 ALDH9A1P49189 494 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 EMDP50402 254 aa16.25■□□□□ 0.19
HDDC3-201ENST00000330334 CDK9P50750 372 aaKnown RBP16.25■□□□□ 0.19
HDDC3-201ENST00000330334 PSPHP78330 225 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms