RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SF3A2Q15428 464 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TGFBIQ15582 683 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UBAP2Q5T6F2 1119 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SDHAF4Q5VUM1 108 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ARL9Q6T311 187 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RNF19BQ6ZMZ0 732 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SPARTQ8N0X7 666 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ARMC10Q8N2F6 343 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GHDCQ8N2G8 530 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR5T2Q8NGG2 359 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LRFN5Q96NI6 719 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TTYH2Q9BSA4 534 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NT5DC2Q9H857 520 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TM7SF3Q9NS93 570 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UCKL1Q9NWZ5 548 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GXYLT2A0PJZ3 443 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TTC24A2A3L6 582 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR6C70A6NIJ9 312 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RFPL1O75677 317 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HRGP04196 525 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ETS2P15036 469 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NR4A2P43354 598 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SEPHS1P49903 392 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GNMTQ14749 295 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 BTLAQ7Z6A9 289 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MFSD6LQ8IWD5 586 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TMEFF1Q8IYR6 380 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SLC22A8Q8TCC7 542 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR2M4Q96R27 311 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CCNL2Q96S94 520 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GMLQ99445 158 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TBL1XR1Q9BZK7 514 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 METTL8Q9H825 291 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TPT1P8Q9HAU6 139 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PREBQ9HCU5 417 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LTB4R2Q9NPC1 389 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HEBP1Q9NRV9 189 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NDRG3Q9UGV2 375 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HCFC2Q9Y5Z7 792 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 A0A1W2PPW3 197 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 XPNPEP2O43895 674 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 CDRT1O95170 752 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 SNAI1O95863 264 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 UBL4AP11441 157 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 CRISP1P54107 249 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 PRKCDQ05655 676 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 GK2Q14410 553 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 LY6G5CQ5SRR4 150 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 TXNDC8Q6A555 127 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 RAB12Q6IQ22 244 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 DPY19L2P1Q6NXN4 242 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 SLC27A4Q6P1M0 643 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.46□□□□□ -1.213e-8■■■■□ 24
VPS13D-211ENST00000543710 C6orf120Q7Z4R8 191 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 TPRA1Q86W33 373 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF433Q8N7K0 673 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 GATAD2BQ8WXI9 593 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 NANOS1Q8WY41 292 aaKnown RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 KLK6Q92876 244 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 MUL1Q969V5 352 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF689Q96CS4 500 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF578Q96N58 590 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 FGFBP2Q9BYJ0 223 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 ENAMQ9NRM1 1142 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 FAM118AQ9NWS6 357 aa7.46□□□□□ -1.21
VPS13D-211ENST00000543710 PAK1IP1Q9NWT1 392 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-211ENST00000543710 ANKRD28O15084 1053 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TBX10O75333 385 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MT-CO2P00403 227 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 BCHEP06276 602 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 DHRS4L1P0CG22 281 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 OR12D1P0DN82 309 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PGCP20142 388 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 DLSTP36957 453 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 BDKRB1P46663 353 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PITPNBP48739 271 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MLLT6P55198 1093 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ARHGAP19Q14CB8 494 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ANKDD1AQ495B1 522 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF805Q5CZA5 627 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 METTL11BQ5VVY1 283 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PGM2L1Q6PCE3 622 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 UTS2BQ765I0 119 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MRPL10Q7Z7H8 261 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PRSS58Q8IYP2 241 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MDGA1Q8NFP4 955 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TOE1Q96GM8 510 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 WRAP53Q9BUR4 548 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 KCNK13Q9HB14 408 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ATPIF1Q9UII2 106 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 LHX6Q9UPM6 363 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MRPS2Q9Y399 296 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 RTCAO00442 366 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MBTPS2O43462 519 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 OR1I1O60431 355 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 IL33O95760 270 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 IFNA5P01569 189 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MAP2K4P45985 399 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PTPRRQ15256 657 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms