RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PGRP06401 933 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 FRKP42685 505 aaPredicted RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 MRPL19P49406 292 aaKnown RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 MAP4K2Q12851 820 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 TBR1Q16650 682 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 TRMT12Q53H54 448 aaKnown RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 ZNF628Q5EBL2 1059 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 GKAP1Q5VSY0 366 aaPredicted RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 HSDL2Q6YN16 418 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 GALNT16Q8N428 558 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 APCDD1LQ8NCL9 501 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 OR7G2Q8NG99 324 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 OR52R1Q8NGF1 315 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 OR1N1Q8NGS0 311 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 ZNF675Q8TD23 568 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 BRIX1Q8TDN6 353 aaKnown RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 ZNF721Q8TF20 911 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 OR5P2Q8WZ92 322 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 EXTL1Q92935 676 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 VPS33AQ96AX1 596 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 GAL3ST4Q96RP7 486 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 ARHGAP9Q9BRR9 750 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 DEFB126Q9BYW3 111 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 NMUR2Q9GZQ4 415 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 LHPPQ9H008 270 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 ZNF385DQ9H6B1 395 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 RMND5AQ9H871 391 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 MMP25Q9NPA2 562 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 SAR1AQ9NR31 198 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 MRGBPQ9NV56 204 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.93□□□□□ -0.18
NUP54-213ENST00000513352 CAPN7Q9Y6W3 813 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 PRSS51A0A1B0GVH4 220 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 NDUFAB1O14561 156 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 PRAMEF2O60811 474 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 PRKAG1P54619 331 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 WNT3P56703 355 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 ZNF155Q12901 538 aaPredicted RBP13.92□□□□□ -0.18
NUP54-213ENST00000513352 VPS26BQ4G0F5 336 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 FCRLBQ6BAA4 426 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 DNAJC14Q6Y2X3 702 aaPredicted RBP13.92□□□□□ -0.18
NUP54-213ENST00000513352 SLC29A4Q7RTT9 530 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 PIGWQ7Z7B1 504 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 MTDHQ86UE4 582 aaKnown RBP13.92□□□□□ -0.18
NUP54-213ENST00000513352 APLFQ8IW19 511 aaPredicted RBP13.92□□□□□ -0.18
NUP54-213ENST00000513352 CPSF7Q8N684 471 aaKnown RBP13.92□□□□□ -0.18
NUP54-213ENST00000513352 OR7G1Q8NGA0 311 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 SPDL1Q96EA4 605 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 OR10A5Q9H207 317 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 PRORYQ9H606 182 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 C3orf14Q9HBI5 128 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 NEUROD4Q9HD90 331 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 EQTNQ9NQ60 294 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 GPR83Q9NYM4 423 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 ARMCX1Q9P291 453 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 PTGFRNQ9P2B2 879 aa13.92□□□□□ -0.18
NUP54-213ENST00000513352 COQ9O75208 318 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ZFAND5O76080 213 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 SLITRK5O94991 958 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ANP32DO95626 131 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 CBX7O95931 251 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ZFP36L2P47974 494 aaKnown RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 SLC37A1P57057 533 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 HBA1P69905 142 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 PHC1P78364 1004 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 MGAT2Q10469 447 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 FUT7Q11130 342 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 KLF10Q13118 480 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 RCAN2Q14206 197 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 MLC1Q15049 377 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 MAPKAPK3Q16644 382 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 C6orf10Q5SRN2 563 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 HLA-DQA1Q5Y7H0 255 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 JMJD6Q6NYC1 403 aaPredicted RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 BLOC1S3Q6QNY0 202 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 FUNDC1Q8IVP5 155 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 SLC5A8Q8N695 610 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 CCDC197Q8NCU1 140 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 OR5AK3PQ8NH89 298 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 BCAS4Q8TDM0 211 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ELP5Q8TE02 316 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 SNRNP27Q8WVK2 155 aaKnown RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 ELP4Q96EB1 424 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ITCHQ96J02 903 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 PANX1Q96RD7 426 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 SEMA4CQ9C0C4 833 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ZCCHC3Q9NUD5 404 aaKnown RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 TAS2R9Q9NYW1 312 aa13.91□□□□□ -0.18
NUP54-213ENST00000513352 ZNF223Q9UK11 482 aaPredicted RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 PPIEQ9UNP9 301 aaKnown RBP13.91□□□□□ -0.18
NUP54-213ENST00000513352 A0A087WV62 115 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 OR6C76A6NM76 312 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 MKRN2OSH3BPM6 223 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 RFXANKO14593 260 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 EMC8O43402 210 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 PRKNO60260 465 aaPredicted RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 PLOD3O60568 738 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 BCAS2O75934 225 aaPredicted RBP13.9□□□□□ -0.18
NUP54-213ENST00000513352 DCTN3O75935 186 aa13.9□□□□□ -0.18
NUP54-213ENST00000513352 IGKV3-11P04433 115 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms