RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 C12orf66Q96MD2 445 aa13.13□□□□□ -0.31
HDAC1-206ENST00000476391 PTDSS2Q9BVG9 487 aa13.13□□□□□ -0.31
HDAC1-206ENST00000476391 RNF32Q9H0A6 362 aa13.13□□□□□ -0.31
HDAC1-206ENST00000476391 NSUN3Q9H649 340 aaKnown RBP13.13□□□□□ -0.31
HDAC1-206ENST00000476391 PIM2Q9P1W9 311 aa13.13□□□□□ -0.31
HDAC1-206ENST00000476391 ADAMTS5Q9UNA0 930 aa13.13□□□□□ -0.31
HDAC1-206ENST00000476391 IRGMA1A4Y4 181 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 HEPACAM2A8MVW5 462 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TAPBPO15533 448 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PRAF2O60831 178 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PAGE1O75459 146 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 LRATO95237 230 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TFP02787 698 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 GABRA1P14867 456 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ITGB8P26012 769 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TAF6P49848 677 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 WDR5P61964 334 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ERVK-25P63136 954 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TMEM132BQ14DG7 1078 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 CHRNA6Q15825 494 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 MPPE1Q53F39 396 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SPOUT1Q5T280 376 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 METTL11BQ5VVY1 283 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SLC25A25Q6KCM7 469 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 CEACAM20Q6UY09 585 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ZNF687Q8N1G0 1237 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TOMM5Q8N4H5 51 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ZNF527Q8NB42 609 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SETD7Q8WTS6 366 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ZSCAN32Q9NX65 697 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 OR6C2Q9NZP2 312 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 COL4A4P53420 1690 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PHIPQ8WWQ0 1821 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 A0A0U1RQF3 1178 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ZNF593O00488 134 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ADAM12O43184 909 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TLR5O60602 858 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PRMT3O60678 531 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 C22orf31O95567 290 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 THP07101 528 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PPP3CBP16298 524 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 S100PP25815 95 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 CHI3L1P36222 383 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SRP9P49458 86 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TTPAP49638 278 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 WNT3P56703 355 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 EIF4EBP2Q13542 120 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 GK2Q14410 553 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 CCDC157Q569K6 752 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SLC25A30Q5SVS4 291 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 ARTNQ5T4W7 220 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PLEKHH3Q7Z736 793 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 C12orf40Q86WS4 652 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TMEM17Q86X19 198 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 FAM26EQ8N5C1 309 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TOP6BLQ8N6T0 577 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 DMBX1Q8NFW5 382 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 GEMIN6Q8WXD5 167 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 EMID1Q96A84 441 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 MRPL48Q96GC5 212 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 KLHL5Q96PQ7 755 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 SAP130Q9H0E3 1048 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 OR51M1Q9H341 326 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 CRTAC1Q9NQ79 661 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 TLR8Q9NR97 1041 aaKnown RBP13.12□□□□□ -0.31
HDAC1-206ENST00000476391 BTNL2Q9UIR0 455 aa13.12□□□□□ -0.31
HDAC1-206ENST00000476391 PRAMEF25A6NGN4 478 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 LOC730098B7Z3J9 87 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 PEX14O75381 377 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 IGLV3-25P01717 112 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 HPXP02790 462 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 GIPP09681 153 aaPredicted RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 PVALBP20472 110 aaPredicted RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 ZNF140P52738 457 aaPredicted RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 RGNQ15493 299 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SV2CQ496J9 727 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SFRP5Q5T4F7 317 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 OR2G6Q5TZ20 316 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 VASNQ6EMK4 673 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 MARCH9Q86YJ5 346 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SLITRK4Q8IW52 837 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 TCEANCQ8N8B7 351 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 OR8J2Q8NGG1 315 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 MAL2Q969L2 176 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 KCTD12Q96CX2 325 aaKnown RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 CMTM7Q96FZ5 175 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 PAWRQ96IZ0 340 aaKnown RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 FCRL2Q96LA5 508 aaPredicted RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 COPS8Q99627 209 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SMOQ99835 787 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 DDX31Q9H8H2 851 aaKnown RBP13.11□□□□□ -0.31
HDAC1-206ENST00000476391 PRDM9Q9NQV7 894 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SPHK1Q9NYA1 384 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SLC9A8Q9Y2E8 581 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 CHST2Q9Y4C5 530 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SHISA3A0PJX4 238 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 C2orf81A6NN90 581 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 J3KTA2 159 aa13.11□□□□□ -0.31
HDAC1-206ENST00000476391 SULT1C2O00338 296 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms