RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GXYLT1Q4G148 440 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 TBCELQ5QJ74 424 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 HLA-DQA1Q5Y7H0 255 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 GALNT12Q8IXK2 581 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 SRRM1Q8IYB3 904 aaKnown RBP17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 OR7G1Q8NGA0 311 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 ACMSDQ8TDX5 336 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 SELENOMQ8WWX9 145 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 TRIM44Q96DX7 344 aaPredicted RBP17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 GAL3ST4Q96RP7 486 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 SMC6Q96SB8 1091 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 MRPL1Q9BYD6 325 aaKnown RBP17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 TEX10Q9NXF1 929 aaPredicted RBP17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 QPCTLQ9NXS2 382 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 TUBA8Q9NY65 449 aaPredicted RBP17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 SLC12A4Q9UP95 1085 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 STK38LQ9Y2H1 464 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 HRH3Q9Y5N1 445 aa17.58■□□□□ 0.4
CCDC28A-203ENST00000617445 INTS1Q8N201 2190 aaKnown RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 ANKRD33BA6NCL7 494 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 GOLGA6L10A6NI86 522 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 FIGNL2A6NMB9 653 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 NPIPA2E9PIF3 369 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 NPIPA3F8WFD2 350 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 TP53I11O14683 189 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 PDYNP01213 254 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 KRT6AP02538 564 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 KRT6BP04259 564 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 HOXD4P09016 255 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CPMP14384 443 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 PORP16435 677 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CHRNB4P30926 498 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 HSD17B3P37058 310 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 MAGEA5P43359 124 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 KRT6CP48668 564 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CDH13P55290 713 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 TRA2BP62995 288 aaKnown RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 KCNJ2P63252 427 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CLCQ05315 142 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 RASA2Q15283 850 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CDSNQ15517 529 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 SGO1Q5FBB7 561 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 EMC4Q5J8M3 183 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 TEX35Q5T0J7 233 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 LETMD1Q6P1Q0 360 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 NCCRP1Q6ZVX7 275 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 COMMD6Q7Z4G1 85 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 ZNF441Q8N8Z8 693 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 FAM13CQ8NE31 585 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 C17orf47Q8NEP4 570 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 SARAFQ96BY9 339 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 SECISBP2Q96T21 854 aaKnown RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 ZFP64Q9NPA5 681 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CFL2Q9Y281 166 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 PCDHA9Q9Y5H5 950 aa17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 CHCHD2Q9Y6H1 151 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-203ENST00000617445 RIPK2O43353 540 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 CLPSP04118 112 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 GSTA1P08263 222 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 GCAP28676 217 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 SSTR2P30874 369 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 DEKP35659 375 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 PIGAP37287 484 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 MAN2A2P49641 1150 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 TMED10P49755 219 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 NRG3P56975 720 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 RPP38P78345 283 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 SLC22A9Q8IVM8 553 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 MARVELD2Q8N4S9 558 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 ACBD4Q8NC06 268 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 LILRB4Q8NHJ6 448 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 UCN3Q969E3 161 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 ZNF382Q96SR6 550 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 FAIM2Q9BWQ8 316 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 ENKD1Q9H0I2 346 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 OR10A5Q9H207 317 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 LDAHQ9H6V9 325 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 ACKR4Q9NPB9 350 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 VPS29Q9UBQ0 182 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 B4GALT7Q9UBV7 327 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 ADGRG4Q8IZF6 3080 aa17.56■□□□□ 0.4
CCDC28A-203ENST00000617445 TRGV5A0A0B4J1U4 118 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ATP6AP2A0A1C7CYW4 349 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 PPP6CO00743 305 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 WDR1O75083 606 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ATP6AP2O75787 350 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 SUPT7LO94864 414 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 SNRPB2P08579 225 aaKnown RBP17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 FREM3P0C091 2139 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 IMPDH1P20839 514 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ATP5F1P24539 256 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ACVR2AP27037 513 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 SSTR4P31391 388 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 KIR3DL1P43629 444 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 NR0B1P51843 470 aaKnown RBP17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 GALNT1Q10472 559 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ZNF678Q5SXM1 525 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 SLC48A1Q6P1K1 146 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 ZNF615Q8N8J6 731 aa17.55■□□□□ 0.4
CCDC28A-203ENST00000617445 OR10G3Q8NGC4 313 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms