RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KIR3DL1P43629 444 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 ATP4BP51164 291 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 Q0VFX4 171 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 GLB1L3Q8NCI6 653 aaPredicted RBP27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 SLC2A12Q8TD20 617 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 ZBED6CLQ96FA7 236 aaPredicted RBP27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 FBXL20Q96IG2 436 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 BHLHE41Q9C0J9 482 aaPredicted RBP27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 OR8D2Q9GZM6 311 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF385DQ9H6B1 395 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 NBEAQ8NFP9 2946 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 HRKO00198 91 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 CT62P0C5K7 136 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 FRKP42685 505 aaPredicted RBP27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 IRX1P78414 480 aaPredicted RBP27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 HSPB3Q12988 150 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 AIMP2Q13155 320 aaKnown RBP27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 PRICKLE4Q2TBC4 344 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 VWA5B2Q8N398 1253 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 OR8J2Q8NGG1 315 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 MAT2BQ9NZL9 334 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 ERVK-19Q9WJR5 959 aa27.61■■■□□ 2.01
LIMCH1-211ENST00000509638 SRSF11Q05519 484 aaKnown RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF267Q14586 743 aaPredicted RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 OR4F3Q6IEY1 312 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 MORN4Q8NDC4 146 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZFP28Q8NHY6 868 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 NCLNQ969V3 563 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ATP13A2Q9NQ11 1180 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ACSS1Q9NUB1 689 aaPredicted RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 PPIEQ9UNP9 301 aaKnown RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 DNAJB5O75953 348 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 MRPS35P82673 323 aaKnown RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF628Q5EBL2 1059 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 C19orf48Q6RUI8 117 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF551Q7Z340 670 aaPredicted RBP27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF321PQ8N8H1 164 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 APCDD1LQ8NCL9 501 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF675Q8TD23 568 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 COPS7AQ9UBW8 275 aa27.6■■■□□ 2.01
LIMCH1-211ENST00000509638 ICAM2P13598 275 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 S100A3P33764 101 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 ZFP36L2P47974 494 aaKnown RBP27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 DGKQP52824 942 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 MANFP55145 182 aaKnown RBP27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 FAM111BQ6SJ93 734 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 APLFQ8IW19 511 aaPredicted RBP27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 KBTBD2Q8IY47 623 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 KIF2BQ8N4N8 673 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 M1APQ8TC57 530 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 APOBEC4Q8WW27 367 aaKnown RBP27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 KAT2AQ92830 837 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 VMP1Q96GC9 406 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 SENP5Q96HI0 755 aaPredicted RBP27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 ART5Q96L15 291 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 CCT8L2Q96SF2 557 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 PRORYQ9H606 182 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 MMP25Q9NPA2 562 aa27.59■■■□□ 2.01
LIMCH1-211ENST00000509638 SERPINA7P05543 415 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 ITGA3P26006 1051 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 GPR143P51810 404 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 POLR2JP52435 117 aaKnown RBP27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 MGAT2Q10469 447 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 BORAQ6PGQ7 559 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 NATD1Q8N6N6 113 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 OR1N1Q8NGS0 311 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 ZNF721Q8TF20 911 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 CCDC167Q9P0B6 97 aa27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 NUP214P35658 2090 aaPredicted RBP27.58■■■□□ 2.01
LIMCH1-211ENST00000509638 A0A1W2PRB8 838 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 FAM234BA2RU67 622 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 IGKV3-11P04433 115 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 PGRP06401 933 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 ITGAMP11215 1152 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 SSTR4P31391 388 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 SOX18P35713 384 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 MC3RP41968 323 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 WNT3P56703 355 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 TIGD2Q4W5G0 525 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 TMEM107Q6UX40 140 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 GALNT16Q8N428 558 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 CTHRC1Q96CG8 243 aa27.57■■■□□ 2
LIMCH1-211ENST00000509638 THOC3Q96J01 351 aaKnown RBP27.57■■■□□ 2
LIMCH1-211ENST00000509638 ZNF223Q9UK11 482 aaPredicted RBP27.57■■■□□ 2
LIMCH1-211ENST00000509638 TRBV11-1A0A0K0K1C0 115 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 FAM107AO95990 144 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 GPC1P35052 558 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 PHC1P78364 1004 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 MAP4K2Q12851 820 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 UBAP2LQ14157 1087 aaKnown RBP27.56■■■□□ 2
LIMCH1-211ENST00000509638 RCAN2Q14206 197 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 COL28A1Q2UY09 1125 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 AGKQ53H12 422 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 GPR155Q7Z3F1 870 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 PIGWQ7Z7B1 504 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 ANKRD46Q86W74 232 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 ELP5Q8TE02 316 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 NUDT9Q9BW91 350 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 SEMA4CQ9C0C4 833 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 NMUR2Q9GZQ4 415 aa27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms