RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 HMSDA8MTL9 139 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TFECO14948 347 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PRAF2O60831 178 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MPC2O95563 127 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SOD1P00441 154 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TFPIP10646 304 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 HPGDP15428 266 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LPOP22079 712 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NOS3P29474 1203 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RABGGTBP53611 331 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 DSC2Q02487 901 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SIM2Q14190 667 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SYT16Q17RD7 645 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RSBN1Q5VWQ0 802 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 WSCD1Q658N2 575 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 OLFML2AQ68BL7 652 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TMPRSS11AQ6ZMR5 421 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 UBE2R2Q712K3 238 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 KRT74Q7RTS7 529 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TPRA1Q86W33 373 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 C9orf40Q8IXQ3 194 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 YIPF7Q8N8F6 280 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 GPR32P1Q8NGA4 272 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 OR56A3Q8NH54 315 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CIPCQ9C0C6 399 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 STRADBQ9C0K7 418 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ABHD16BQ9H3Z7 469 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PCDH12Q9NPG4 1184 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 GPRC5BQ9NZH0 403 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 DTX4Q9Y2E6 619 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 WASH3PC4AMC7 463 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 KDELR3O43731 214 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 FZD7O75084 574 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF821O75541 412 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NUDT14O95848 222 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LALBAP00709 142 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 EGFP01133 1207 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PRKACGP22612 351 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NUP62P37198 522 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 BRCC3P46736 316 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RAB14P61106 215 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CACNG1Q06432 222 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PTPRNQ16849 979 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LIPJQ5W064 366 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 HBMQ6B0K9 141 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NCEH1Q6PIU2 408 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MTSS1LQ765P7 747 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 DENND1CQ8IV53 801 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 Q8N9G6 341 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 KISS1RQ969F8 398 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ZSWIM3Q96MP5 696 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 C17orf62Q9BQA9 187 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LPIN3Q9BQK8 851 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 EIF2B4Q9UI10 523 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TMCC3Q9ULS5 477 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SAMHD1Q9Y3Z3 626 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PIPSLA2A3N6 862 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRD66B4E2M5 251 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 RAD1O60671 282 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 AP2A2O94973 939 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CYP4B1P13584 511 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CRATP43155 626 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 GPR17Q13304 367 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CAMK1Q14012 370 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PTGES3Q15185 160 aaKnown RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CLVS2Q5SYC1 327 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 FAM182AQ5T1J6 154 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NADSYN1Q6IA69 706 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 C11orf88Q6PI97 169 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 BTN2A1Q7KYR7 527 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 KIAA0907Q7Z7F0 614 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NXPE1Q8N323 547 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZBTB2Q8N680 514 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 C11orf65Q8NCR3 313 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 B3GNT7Q8NFL0 401 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SUN5Q8TC36 379 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NDRG1Q92597 394 aaKnown RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 IGSF8Q969P0 613 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SGTBQ96EQ0 304 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TM9SF2Q99805 663 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PELOQ9BRX2 385 aaKnown RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 EVA1AQ9H8M9 152 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 LHX3Q9UBR4 397 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NPEPPSL1A6NEC2 478 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PRODHO43272 600 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TBL1XO60907 577 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SOCS5O75159 536 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PPM1BO75688 479 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TYRP14679 529 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 RHCEP18577 417 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CDKN2CP42773 168 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ASMTP46597 345 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TATDN3Q17R31 274 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZIK1Q3SY52 487 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TBRG1Q3YBR2 411 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF684Q5T5D7 378 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM65Q6PI78 240 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 LINC00518Q8N0U6 118 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms