RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 GAS2L2Q8NHY3 880 aa22.09■■□□□ 1.13
PHGDH-234ENST00000642041 PASKQ96RG2 1323 aa22.08■■□□□ 1.13
PHGDH-234ENST00000642041 POTEIP0CG38 1075 aa22.07■■□□□ 1.12
PHGDH-234ENST00000642041 POTEJP0CG39 1038 aa22.07■■□□□ 1.12
PHGDH-234ENST00000642041 HSPA8P11142 646 aaKnown RBP22.07■■□□□ 1.12
PHGDH-234ENST00000642041 TRIM35Q9UPQ4 493 aa22.07■■□□□ 1.12
PHGDH-234ENST00000642041 VIRMAQ69YN4 1812 aaKnown RBP22.06■■□□□ 1.12
PHGDH-234ENST00000642041 AEBP1Q8IUX7 1158 aa22.06■■□□□ 1.12
PHGDH-234ENST00000642041 IFT57Q9NWB7 429 aa22.06■■□□□ 1.12
PHGDH-234ENST00000642041 TMEM88BA6NKF7 163 aa22.05■■□□□ 1.12
PHGDH-234ENST00000642041 HSP90AB1P08238 724 aaKnown RBP22.05■■□□□ 1.12
PHGDH-234ENST00000642041 PDE3AQ14432 1141 aa22.05■■□□□ 1.12
PHGDH-234ENST00000642041 ERFEQ4G0M1 354 aa22.05■■□□□ 1.12
PHGDH-234ENST00000642041 RRP7AQ9Y3A4 280 aaKnown RBP22.05■■□□□ 1.12
PHGDH-234ENST00000642041 DLEC1Q9Y238 1755 aa22.04■■□□□ 1.12
PHGDH-234ENST00000642041 ZPR1O75312 459 aa22.04■■□□□ 1.12
PHGDH-234ENST00000642041 CHMP4AQ9BY43 222 aa22.04■■□□□ 1.12
PHGDH-234ENST00000642041 DICER1Q9UPY3 1922 aaKnown RBP22.04■■□□□ 1.12
PHGDH-234ENST00000642041 CCDC85CA6NKD9 419 aa22.03■■□□□ 1.12
PHGDH-234ENST00000642041 PTCD1O75127 700 aaKnown RBP22.03■■□□□ 1.12
PHGDH-234ENST00000642041 BABAM1Q9NWV8 329 aa22.03■■□□□ 1.12
PHGDH-234ENST00000642041 AFDNP55196 1824 aaKnown RBP22.02■■□□□ 1.12
PHGDH-234ENST00000642041 CABP4P57796 275 aa22.02■■□□□ 1.12
PHGDH-234ENST00000642041 USPL1Q5W0Q7 1092 aa22.02■■□□□ 1.12
PHGDH-234ENST00000642041 LDHDQ86WU2 507 aa22.02■■□□□ 1.12
PHGDH-234ENST00000642041 C2CD5Q86YS7 1000 aa22.02■■□□□ 1.12
PHGDH-234ENST00000642041 H0YIN7 160 aa22.01■■□□□ 1.11
PHGDH-234ENST00000642041 NFIXQ14938 502 aa22.01■■□□□ 1.11
PHGDH-234ENST00000642041 INTS5Q6P9B9 1019 aaKnown RBP22.01■■□□□ 1.11
PHGDH-234ENST00000642041 RTF1Q92541 710 aaKnown RBP22.01■■□□□ 1.11
PHGDH-234ENST00000642041 CFAP44Q96MT7 982 aa22.01■■□□□ 1.11
PHGDH-234ENST00000642041 ADAMTS7Q9UKP4 1686 aa22.01■■□□□ 1.11
PHGDH-234ENST00000642041 NRXN2Q9P2S2 1712 aa22■■□□□ 1.11
PHGDH-234ENST00000642041 DDNO94850 711 aaPredicted RBP22■■□□□ 1.11
PHGDH-234ENST00000642041 MAP2K1Q02750 393 aaPredicted RBP22■■□□□ 1.11
PHGDH-234ENST00000642041 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
PHGDH-234ENST00000642041 ITGBL1O95965 494 aaPredicted RBP21.99■■□□□ 1.11
PHGDH-234ENST00000642041 IQCA1LA6NCM1 817 aa21.98■■□□□ 1.11
PHGDH-234ENST00000642041 RASSF10A6NK89 507 aa21.98■■□□□ 1.11
PHGDH-234ENST00000642041 IPO8O15397 1037 aaKnown RBP21.98■■□□□ 1.11
PHGDH-234ENST00000642041 SERPINB2P05120 415 aa21.98■■□□□ 1.11
PHGDH-234ENST00000642041 AMOTQ4VCS5 1084 aa21.98■■□□□ 1.11
PHGDH-234ENST00000642041 PHACTR3Q96KR7 559 aa21.98■■□□□ 1.11
PHGDH-234ENST00000642041 CHMP4BQ9H444 224 aaKnown RBP21.98■■□□□ 1.11
PHGDH-234ENST00000642041 SPINK5Q9NQ38 1064 aaPredicted RBP21.98■■□□□ 1.11
PHGDH-234ENST00000642041 SOS1Q07889 1333 aaPredicted RBP21.98■■□□□ 1.11
PHGDH-234ENST00000642041 BRPF1P55201 1214 aaPredicted RBP21.97■■□□□ 1.11
PHGDH-234ENST00000642041 DEFB115Q30KQ5 88 aa21.97■■□□□ 1.11
PHGDH-234ENST00000642041 RARSP54136 660 aaKnown RBP21.96■■□□□ 1.11
PHGDH-234ENST00000642041 PLEKHO1Q53GL0 409 aaPredicted RBP21.96■■□□□ 1.11
PHGDH-234ENST00000642041 CCDC136Q96JN2 1154 aa21.96■■□□□ 1.11
PHGDH-234ENST00000642041 TAF1DQ9H5J8 278 aaPredicted RBP21.96■■□□□ 1.11
PHGDH-234ENST00000642041 NARFQ9UHQ1 456 aa21.96■■□□□ 1.11
PHGDH-234ENST00000642041 FANCIQ9NVI1 1328 aa21.96■■□□□ 1.11
PHGDH-234ENST00000642041 FER1L6Q2WGJ9 1857 aa21.96■■□□□ 1.11
PHGDH-234ENST00000642041 TJP1Q07157 1748 aa21.95■■□□□ 1.1
PHGDH-234ENST00000642041 C21orf2O43822 256 aa21.95■■□□□ 1.1
PHGDH-234ENST00000642041 ZNF853P0CG23 659 aa21.95■■□□□ 1.1
PHGDH-234ENST00000642041 LTBP3Q9NS15 1303 aa21.95■■□□□ 1.1
PHGDH-234ENST00000642041 PDE4DIPQ5VU43 2346 aa21.95■■□□□ 1.1
PHGDH-234ENST00000642041 CANXP27824 592 aaKnown RBP21.94■■□□□ 1.1
PHGDH-234ENST00000642041 L3MBTL3Q96JM7 780 aaPredicted RBP21.94■■□□□ 1.1
PHGDH-234ENST00000642041 WDR33Q9C0J8 1336 aaKnown RBP21.94■■□□□ 1.1
PHGDH-234ENST00000642041 SCN4AP35499 1836 aa21.93■■□□□ 1.1
PHGDH-234ENST00000642041 NFATC2IPQ8NCF5 419 aa21.93■■□□□ 1.1
PHGDH-234ENST00000642041 TAOK3Q9H2K8 898 aa21.93■■□□□ 1.1
PHGDH-234ENST00000642041 PDZRN3Q9UPQ7 1066 aa21.93■■□□□ 1.1
PHGDH-234ENST00000642041 KIF16BQ96L93 1317 aa21.92■■□□□ 1.1
PHGDH-234ENST00000642041 ZNF530Q6P9A1 599 aaPredicted RBP21.92■■□□□ 1.1
PHGDH-234ENST00000642041 ZNF622Q969S3 477 aaKnown RBP eCLIP21.92■■□□□ 1.12e-6■■■□□ 15.2
PHGDH-234ENST00000642041 TNRC18O15417 2968 aaPredicted RBP21.92■■□□□ 1.1
PHGDH-234ENST00000642041 CARMIL3Q8ND23 1372 aa21.91■■□□□ 1.1
PHGDH-234ENST00000642041 GNAT3A8MTJ3 354 aa21.91■■□□□ 1.1
PHGDH-234ENST00000642041 IRX6P78412 446 aaPredicted RBP21.91■■□□□ 1.1
PHGDH-234ENST00000642041 MTHFSDQ2M296 383 aaKnown RBP21.91■■□□□ 1.1
PHGDH-234ENST00000642041 BCL2L12Q9HB09 334 aa21.91■■□□□ 1.1
PHGDH-234ENST00000642041 ZNF219Q9P2Y4 722 aaPredicted RBP21.91■■□□□ 1.1
PHGDH-234ENST00000642041 DLG5Q8TDM6 1919 aa21.89■■□□□ 1.09
PHGDH-234ENST00000642041 EXOSC9Q06265 439 aaKnown RBP21.89■■□□□ 1.09
PHGDH-234ENST00000642041 C1orf141Q5JVX7 400 aa21.89■■□□□ 1.09
PHGDH-234ENST00000642041 DNAJC10Q8IXB1 793 aa21.89■■□□□ 1.09
PHGDH-234ENST00000642041 ARHGAP45Q92619 1136 aa21.89■■□□□ 1.09
PHGDH-234ENST00000642041 EAPPQ56P03 285 aaPredicted RBP21.88■■□□□ 1.09
PHGDH-234ENST00000642041 ZKSCAN2Q63HK3 967 aa21.88■■□□□ 1.09
PHGDH-234ENST00000642041 COL15A1P39059 1388 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 CHL1O00533 1208 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 CYP19A1P11511 503 aaPredicted RBP21.87■■□□□ 1.09
PHGDH-234ENST00000642041 PDE6BP35913 854 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 AKAP4Q5JQC9 854 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 BEGAINQ9BUH8 593 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 BRIP1Q9BX63 1249 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 CLEC11AQ9Y240 323 aa21.87■■□□□ 1.09
PHGDH-234ENST00000642041 CNTROBQ8N137 903 aa21.86■■□□□ 1.09
PHGDH-234ENST00000642041 ABT1Q9ULW3 272 aaKnown RBP21.85■■□□□ 1.09
PHGDH-234ENST00000642041 ANKRD31Q8N7Z5 1873 aa21.84■■□□□ 1.09
PHGDH-234ENST00000642041 SOGA3Q5TF21 947 aa21.84■■□□□ 1.09
PHGDH-234ENST00000642041 HACL1Q9UJ83 578 aa21.84■■□□□ 1.09
PHGDH-234ENST00000642041 ADAMTSL1Q8N6G6 1762 aa21.84■■□□□ 1.09
PHGDH-234ENST00000642041 BCAR3O75815 825 aa21.83■■□□□ 1.09
PHGDH-234ENST00000642041 PNMA8AQ86V59 439 aaPredicted RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms