RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 MASTLQ96GX5 879 aa13.32□□□□□ -0.28
PHGDH-212ENST00000641247 DDX21Q9NR30 783 aaKnown RBP eCLIP13.32□□□□□ -0.28
PHGDH-212ENST00000641247 ABT1Q9ULW3 272 aaKnown RBP13.32□□□□□ -0.28
PHGDH-212ENST00000641247 COL11A2P13942 1736 aaPredicted RBP13.32□□□□□ -0.28
PHGDH-212ENST00000641247 ADAMTSL1Q8N6G6 1762 aa13.32□□□□□ -0.28
PHGDH-212ENST00000641247 SLX4Q8IY92 1834 aa13.32□□□□□ -0.28
PHGDH-212ENST00000641247 FZD9O00144 591 aa13.31□□□□□ -0.28
PHGDH-212ENST00000641247 AOC2O75106 756 aa13.31□□□□□ -0.28
PHGDH-212ENST00000641247 CAMTA2O94983 1202 aa13.31□□□□□ -0.28
PHGDH-212ENST00000641247 MTHFSDQ2M296 383 aaKnown RBP13.31□□□□□ -0.28
PHGDH-212ENST00000641247 CST9Q5W186 159 aa13.31□□□□□ -0.28
PHGDH-212ENST00000641247 ZNF496Q96IT1 587 aaPredicted RBP13.31□□□□□ -0.28
PHGDH-212ENST00000641247 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
PHGDH-212ENST00000641247 A0A087WZG4 1122 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 A1BGP04217 495 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 ZEB1P37275 1124 aaPredicted RBP13.3□□□□□ -0.28
PHGDH-212ENST00000641247 FKBP4Q02790 459 aaKnown RBP eCLIP13.3□□□□□ -0.28
PHGDH-212ENST00000641247 GRM1Q13255 1194 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 CAPNS2Q96L46 248 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 GPR101Q96P66 508 aaPredicted RBP13.3□□□□□ -0.28
PHGDH-212ENST00000641247 MCOLN1Q9GZU1 580 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 PANK3Q9H999 370 aa13.3□□□□□ -0.28
PHGDH-212ENST00000641247 ZNF330Q9Y3S2 320 aaPredicted RBP13.3□□□□□ -0.28
PHGDH-212ENST00000641247 DICER1Q9UPY3 1922 aaKnown RBP13.3□□□□□ -0.28
PHGDH-212ENST00000641247 MRC1P22897 1456 aa13.29□□□□□ -0.28
PHGDH-212ENST00000641247 HMOX1P09601 288 aa13.29□□□□□ -0.28
PHGDH-212ENST00000641247 CCDC93Q567U6 631 aa13.29□□□□□ -0.28
PHGDH-212ENST00000641247 CNBD1Q8NA66 436 aa13.29□□□□□ -0.28
PHGDH-212ENST00000641247 SETDB2Q96T68 719 aa13.29□□□□□ -0.28
PHGDH-212ENST00000641247 TRAF5O00463 557 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 STARD3NLO95772 234 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 PIP4K2AP48426 406 aaPredicted RBP13.28□□□□□ -0.28
PHGDH-212ENST00000641247 SOGA3Q5TF21 947 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 SLC51AQ86UW1 340 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 PNMA8AQ86V59 439 aaPredicted RBP13.28□□□□□ -0.28
PHGDH-212ENST00000641247 SYNE4Q8N205 404 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 CFAP44Q96MT7 982 aa13.28□□□□□ -0.28
PHGDH-212ENST00000641247 SCN11AQ9UI33 1791 aa13.27□□□□□ -0.28
PHGDH-212ENST00000641247 KLRG2A4D1S0 409 aaPredicted RBP13.27□□□□□ -0.29
PHGDH-212ENST00000641247 KCNQ3O43525 872 aa13.27□□□□□ -0.29
PHGDH-212ENST00000641247 IL6STP40189 918 aaPredicted RBP13.27□□□□□ -0.29
PHGDH-212ENST00000641247 EPS15P42566 896 aa13.27□□□□□ -0.29
PHGDH-212ENST00000641247 PAXIP1Q6ZW49 1069 aaPredicted RBP13.27□□□□□ -0.29
PHGDH-212ENST00000641247 SCN4AP35499 1836 aa13.26□□□□□ -0.29
PHGDH-212ENST00000641247 IARSP41252 1262 aaKnown RBP13.26□□□□□ -0.29
PHGDH-212ENST00000641247 ST5P78524 1137 aa13.26□□□□□ -0.29
PHGDH-212ENST00000641247 MORC1Q86VD1 984 aa13.26□□□□□ -0.29
PHGDH-212ENST00000641247 IL17REQ8NFR9 667 aa13.26□□□□□ -0.29
PHGDH-212ENST00000641247 COL4A5P29400 1685 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 SNED1Q8TER0 1413 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 HEG1Q9ULI3 1381 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 SCNN1DP51172 638 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 GPC2Q8N158 579 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 TLL2Q9Y6L7 1015 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 LTBP1Q14766 1721 aa13.25□□□□□ -0.29
PHGDH-212ENST00000641247 PRAMEF22A3QJZ6 481 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 NPR1P16066 1061 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 ZNF790Q6PG37 636 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 TTC5Q8N0Z6 440 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 ZIC5Q96T25 663 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 GJA3Q9Y6H8 435 aa13.24□□□□□ -0.29
PHGDH-212ENST00000641247 NPHP1O15259 732 aa13.23□□□□□ -0.29
PHGDH-212ENST00000641247 ECE1P42892 770 aa13.23□□□□□ -0.29
PHGDH-212ENST00000641247 NBPF5PQ86XG9 351 aaPredicted RBP13.23□□□□□ -0.29
PHGDH-212ENST00000641247 DZIP3Q86Y13 1208 aaKnown RBP13.23□□□□□ -0.29
PHGDH-212ENST00000641247 RTKN2Q8IZC4 609 aa13.23□□□□□ -0.29
PHGDH-212ENST00000641247 BEGAINQ9BUH8 593 aa13.23□□□□□ -0.29
PHGDH-212ENST00000641247 THSD7BQ9C0I4 1608 aa13.23□□□□□ -0.29
PHGDH-212ENST00000641247 MAP2K2P36507 400 aa13.22□□□□□ -0.29
PHGDH-212ENST00000641247 DGKZQ13574 1117 aa13.22□□□□□ -0.29
PHGDH-212ENST00000641247 CLSPNQ9HAW4 1339 aa13.21□□□□□ -0.29
PHGDH-212ENST00000641247 FAM177BA6PVY3 158 aa13.21□□□□□ -0.29
PHGDH-212ENST00000641247 SAPCD2Q86UD0 394 aa13.21□□□□□ -0.29
PHGDH-212ENST00000641247 TEX13AQ9BXU3 409 aaPredicted RBP13.21□□□□□ -0.29
PHGDH-212ENST00000641247 SCN7AQ01118 1682 aa13.21□□□□□ -0.3
PHGDH-212ENST00000641247 CACNA1SQ13698 1873 aa13.21□□□□□ -0.3
PHGDH-212ENST00000641247 UBR2Q8IWV8 1755 aa13.2□□□□□ -0.3
PHGDH-212ENST00000641247 EIF6P56537 245 aaKnown RBP13.19□□□□□ -0.3
PHGDH-212ENST00000641247 HLFQ16534 295 aa13.19□□□□□ -0.3
PHGDH-212ENST00000641247 CIAPIN1Q6FI81 312 aa13.19□□□□□ -0.3
PHGDH-212ENST00000641247 DLK2Q6UY11 383 aa13.19□□□□□ -0.3
PHGDH-212ENST00000641247 JDP2Q8WYK2 163 aa13.19□□□□□ -0.3
PHGDH-212ENST00000641247 PSMD1Q99460 953 aa13.19□□□□□ -0.3
PHGDH-212ENST00000641247 NBPF26B4DH59 902 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 CELF2O95319 508 aaKnown RBP13.18□□□□□ -0.3
PHGDH-212ENST00000641247 SOX10P56693 466 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 NBPF10Q6P3W6 841 aaKnown RBP13.18□□□□□ -0.3
PHGDH-212ENST00000641247 CLEC4GQ6UXB4 293 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 TPTE2Q6XPS3 522 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 USP50Q70EL3 339 aaPredicted RBP13.18□□□□□ -0.3
PHGDH-212ENST00000641247 NBPF15Q8N660 670 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
PHGDH-212ENST00000641247 GLIS2Q9BZE0 524 aaPredicted RBP13.18□□□□□ -0.3
PHGDH-212ENST00000641247 NIP7Q9Y221 180 aaKnown RBP eCLIP13.18□□□□□ -0.3
PHGDH-212ENST00000641247 ARFGEF2Q9Y6D5 1785 aa13.17□□□□□ -0.3
PHGDH-212ENST00000641247 LMOD1P29536 600 aaPredicted RBP13.17□□□□□ -0.3
PHGDH-212ENST00000641247 ALDH1B1P30837 517 aa13.17□□□□□ -0.3
PHGDH-212ENST00000641247 BRPF1P55201 1214 aaPredicted RBP13.17□□□□□ -0.3
PHGDH-212ENST00000641247 HIRAP54198 1017 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms