RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GOLGA6L1Q8N7Z2 621 aa9.2□□□□□ -0.94
CD44-239ENST00000639002 ATAD2Q6PL18 1390 aa9.2□□□□□ -0.94
CD44-239ENST00000639002 LGR5O75473 907 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 DPYDQ12882 1025 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 C1orf53Q5VUE5 145 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 KANK3Q6NY19 840 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 BEND7Q8N7W2 519 aaPredicted RBP9.19□□□□□ -0.94
CD44-239ENST00000639002 GAS2L2Q8NHY3 880 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 ARXQ96QS3 562 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 PHACTR1Q9C0D0 580 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 GJA3Q9Y6H8 435 aa9.19□□□□□ -0.94
CD44-239ENST00000639002 NEURL1BA8MQ27 555 aa9.18□□□□□ -0.94
CD44-239ENST00000639002 PPP1R12BO60237 982 aaPredicted RBP9.18□□□□□ -0.94
CD44-239ENST00000639002 EPXP11678 715 aa9.18□□□□□ -0.94
CD44-239ENST00000639002 LARP1Q6PKG0 1096 aaKnown RBP9.18□□□□□ -0.94
CD44-239ENST00000639002 C2orf49Q9BVC5 232 aaPredicted RBP9.18□□□□□ -0.94
CD44-239ENST00000639002 VRTNQ9H8Y1 702 aa9.18□□□□□ -0.94
CD44-239ENST00000639002 GPC6Q9Y625 555 aaPredicted RBP9.18□□□□□ -0.94
CD44-239ENST00000639002 FAM196BA6NMK8 535 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L15C9J2P7 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L10C9JJH3 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L13C9JLJ4 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L12C9JPN9 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L11C9JVI0 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L21D6R901 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L18D6R9N7 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L22D6RA61 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L17D6RBQ6 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L19D6RCP7 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L20D6RJB6 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 USP17L24Q0WX57 530 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 FCHSD1Q86WN1 690 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 STAG2Q8N3U4 1231 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 ZNF280CQ8ND82 737 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 RHPN1Q8TCX5 695 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 SCG3Q8WXD2 468 aaKnown RBP9.17□□□□□ -0.94
CD44-239ENST00000639002 BTBD6Q96KE9 485 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 MARK1Q9P0L2 795 aa9.17□□□□□ -0.94
CD44-239ENST00000639002 SFSWAPQ12872 951 aaKnown RBP9.16□□□□□ -0.94
CD44-239ENST00000639002 LAMC2Q13753 1193 aa9.16□□□□□ -0.94
CD44-239ENST00000639002 ANKMY2Q8IV38 441 aa9.16□□□□□ -0.94
CD44-239ENST00000639002 HSH2DQ96JZ2 352 aa9.16□□□□□ -0.94
CD44-239ENST00000639002 ITGB2P05107 769 aa9.15□□□□□ -0.94
CD44-239ENST00000639002 PCBP4P57723 403 aaKnown RBP9.15□□□□□ -0.94
CD44-239ENST00000639002 LINC00114Q6XXX2 140 aa9.15□□□□□ -0.94
CD44-239ENST00000639002 ALDH16A1Q8IZ83 802 aa9.15□□□□□ -0.94
CD44-239ENST00000639002 RBM19Q9Y4C8 960 aaKnown RBP9.15□□□□□ -0.94
CD44-239ENST00000639002 PHF20L1A8MW92 1017 aa9.14□□□□□ -0.95
CD44-239ENST00000639002 CDCA8Q53HL2 280 aa9.14□□□□□ -0.95
CD44-239ENST00000639002 DCAF5Q96JK2 942 aa9.14□□□□□ -0.95
CD44-239ENST00000639002 SUSD3Q96L08 255 aa9.14□□□□□ -0.95
CD44-239ENST00000639002 HINFPQ9BQA5 517 aa9.14□□□□□ -0.95
CD44-239ENST00000639002 AVENQ9NQS1 362 aaPredicted RBP9.14□□□□□ -0.95
CD44-239ENST00000639002 ZNF468Q5VIY5 522 aaPredicted RBP9.13□□□□□ -0.95
CD44-239ENST00000639002 CHMP7Q8WUX9 453 aaPredicted RBP9.13□□□□□ -0.95
CD44-239ENST00000639002 SLC30A3Q99726 388 aa9.13□□□□□ -0.95
CD44-239ENST00000639002 MDFIQ99750 246 aa9.13□□□□□ -0.95
CD44-239ENST00000639002 NEUROD4Q9HD90 331 aa9.13□□□□□ -0.95
CD44-239ENST00000639002 ADH6P28332 368 aa9.12□□□□□ -0.95
CD44-239ENST00000639002 PODNQ7Z5L7 613 aa9.12□□□□□ -0.95
CD44-239ENST00000639002 CHMP3Q9Y3E7 222 aa9.12□□□□□ -0.95
CD44-239ENST00000639002 COL8A1P27658 744 aa9.11□□□□□ -0.95
CD44-239ENST00000639002 SRPK2P78362 688 aaKnown RBP9.11□□□□□ -0.95
CD44-239ENST00000639002 RRAGCQ9HB90 399 aa9.11□□□□□ -0.95
CD44-239ENST00000639002 RFX1P22670 979 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 IGFBP4P22692 258 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 DGKGP49619 791 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 TYRO3Q06418 890 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 SYT9Q86SS6 491 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 NGLY1Q96IV0 654 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 SUV39H2Q9H5I1 410 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 MKL2Q9ULH7 1088 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 PRR12Q9ULL5 1215 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 BCS1LQ9Y276 419 aa9.1□□□□□ -0.95
CD44-239ENST00000639002 AMPD1P23109 780 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 WEE1P30291 646 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 KCNQ4P56696 695 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 CHSY3Q70JA7 882 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 CEP63Q96MT8 703 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 ZMYND15Q9H091 742 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 BRD7Q9NPI1 651 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 ANKIB1Q9P2G1 1089 aa9.09□□□□□ -0.95
CD44-239ENST00000639002 PLA2G4EQ3MJ16 856 aa9.08□□□□□ -0.96
CD44-239ENST00000639002 GPAT2Q6NUI2 795 aa9.08□□□□□ -0.96
CD44-239ENST00000639002 DMGDHQ9UI17 866 aaKnown RBP9.08□□□□□ -0.96
CD44-239ENST00000639002 KRBA1A5PL33 1030 aa9.07□□□□□ -0.96
CD44-239ENST00000639002 BTLAQ7Z6A9 289 aa9.07□□□□□ -0.96
CD44-239ENST00000639002 SIN3BO75182 1162 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 SPEM2Q0P670 501 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 RTN1Q16799 776 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 RAB44Q7Z6P3 723 aaPredicted RBP9.06□□□□□ -0.96
CD44-239ENST00000639002 FAM200AQ8TCP9 573 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 ZMIZ1Q9ULJ6 1067 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 KCNH4Q9UQ05 1017 aa9.06□□□□□ -0.96
CD44-239ENST00000639002 ELOA3CA0A087WX78 387 aaPredicted RBP9.05□□□□□ -0.96
CD44-239ENST00000639002 ELOA3DA6NLF2 546 aaPredicted RBP9.05□□□□□ -0.96
CD44-239ENST00000639002 GRNP28799 593 aaKnown RBP9.05□□□□□ -0.96
CD44-239ENST00000639002 ELOA3BQ3SY89 546 aa9.05□□□□□ -0.96
CD44-239ENST00000639002 ELOA3Q8NG57 546 aa9.05□□□□□ -0.96
CD44-239ENST00000639002 QTRT2Q9H974 415 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms