RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 CTNNA3Q9UI47 895 aa17.09■□□□□ 0.33
VPS36-207ENST00000611132 SYNMO15061 1565 aa17.09■□□□□ 0.33
VPS36-207ENST00000611132 U2AF2P26368 475 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■□□□□ 10.4
VPS36-207ENST00000611132 TTC21BQ7Z4L5 1316 aa17.09■□□□□ 0.33
VPS36-207ENST00000611132 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
VPS36-207ENST00000611132 CCDC102AQ96A19 550 aa17.09■□□□□ 0.33
VPS36-207ENST00000611132 U3KPZ7 1027 aaPredicted RBP17.09■□□□□ 0.33
VPS36-207ENST00000611132 PIK3R4Q99570 1358 aa17.09■□□□□ 0.33
VPS36-207ENST00000611132 HMG20BQ9P0W2 317 aa17.08■□□□□ 0.33
VPS36-207ENST00000611132 MSH6P52701 1360 aa17.08■□□□□ 0.33
VPS36-207ENST00000611132 SKIDA1Q1XH10 827 aa17.08■□□□□ 0.32
VPS36-207ENST00000611132 RBM8AQ9Y5S9 174 aaKnown RBP17.08■□□□□ 0.32
VPS36-207ENST00000611132 SLC3A2P08195 630 aaKnown RBP17.08■□□□□ 0.32
VPS36-207ENST00000611132 BBXQ8WY36 941 aaPredicted RBP17.08■□□□□ 0.32
VPS36-207ENST00000611132 TCEANC2Q96MN5 208 aa17.08■□□□□ 0.32
VPS36-207ENST00000611132 KDM5AP29375 1690 aaKnown RBP17.08■□□□□ 0.32
VPS36-207ENST00000611132 BCL2L12Q9HB09 334 aa17.08■□□□□ 0.32
VPS36-207ENST00000611132 CASQ1P31415 396 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 PIP4K2AP48426 406 aaPredicted RBP17.07■□□□□ 0.32
VPS36-207ENST00000611132 CEP170Q5SW79 1584 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 PRDM15P57071 1507 aaPredicted RBP17.07■□□□□ 0.32
VPS36-207ENST00000611132 CDKL5O76039 1030 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 SART3Q15020 963 aaKnown RBP17.07■□□□□ 0.32
VPS36-207ENST00000611132 CCDC158Q5M9N0 1113 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 C8orf76Q96K31 380 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 ABCC4O15439 1325 aa17.07■□□□□ 0.32
VPS36-207ENST00000611132 BIN1O00499 593 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 ARHGAP29Q52LW3 1261 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 NEK1Q96PY6 1258 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 GBP3Q9H0R5 595 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 VPS53Q5VIR6 699 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 BRMS1Q9HCU9 246 aa17.06■□□□□ 0.32
VPS36-207ENST00000611132 PI4KAP2A4QPH2 592 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 PI4KAP1Q8N8J0 262 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 MYL6BP14649 208 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 NLRP2Q9NX02 1062 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 CCDC69A6NI79 296 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 CCT2P78371 535 aaKnown RBP17.05■□□□□ 0.32
VPS36-207ENST00000611132 CHAMP1Q96JM3 812 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 SBNO2Q9Y2G9 1366 aa17.05■□□□□ 0.32
VPS36-207ENST00000611132 PPIP5K1Q6PFW1 1433 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 NAP1L1P55209 391 aaKnown RBP17.04■□□□□ 0.32
VPS36-207ENST00000611132 JAKMIP3Q5VZ66 844 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 TRIM22Q8IYM9 498 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 TBC1D2BQ9UPU7 963 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 OSCARQ8IYS5 282 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 SOS1Q07889 1333 aaPredicted RBP17.04■□□□□ 0.32
VPS36-207ENST00000611132 EPB41L2O43491 1005 aaKnown RBP17.04■□□□□ 0.32
VPS36-207ENST00000611132 HSP90AB2PQ58FF8 381 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 TTC39AQ5SRH9 613 aa17.04■□□□□ 0.32
VPS36-207ENST00000611132 MARCH6O60337 910 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.03■□□□□ 0.32
VPS36-207ENST00000611132 DBF4Q9UBU7 674 aaPredicted RBP17.03■□□□□ 0.32
VPS36-207ENST00000611132 ARHGEF5Q12774 1597 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 FKBP4Q02790 459 aaKnown RBP eCLIP17.03■□□□□ 0.32
VPS36-207ENST00000611132 GABPB1Q06547 395 aaPredicted RBP17.03■□□□□ 0.32
VPS36-207ENST00000611132 DNAI1Q9UI46 699 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 GOLGA6L9A6NEM1 432 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 TUBB4AP04350 444 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 CPA1P15085 419 aa17.03■□□□□ 0.32
VPS36-207ENST00000611132 EIF4A2Q14240 407 aaKnown RBP17.03■□□□□ 0.32
VPS36-207ENST00000611132 KIF24Q5T7B8 1368 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 KIF5CO60282 957 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 IMMTQ16891 758 aaKnown RBP17.02■□□□□ 0.32
VPS36-207ENST00000611132 KIF4BQ2VIQ3 1234 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 AOPEPQ8N6M6 819 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 BRF1Q92994 677 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 DEF6Q9H4E7 631 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 STK11IPQ8N1F8 1099 aa17.02■□□□□ 0.32
VPS36-207ENST00000611132 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.02■□□□□ 0.314e-6■■□□□ 13.6
VPS36-207ENST00000611132 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.31
VPS36-207ENST00000611132 LARP1Q6PKG0 1096 aaKnown RBP17.01■□□□□ 0.31
VPS36-207ENST00000611132 TXLNBQ8N3L3 684 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 TTC41PQ6P2S7 1318 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 ERVK-7P63135 1459 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 ABCC10Q5T3U5 1492 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 ERO1AQ96HE7 468 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 ZNHIT6Q9NWK9 470 aaKnown RBP17.01■□□□□ 0.31
VPS36-207ENST00000611132 RIMS2Q9UQ26 1411 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 GNG11P61952 73 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 SNX14Q9Y5W7 946 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 ZNF518AQ6AHZ1 1483 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 CDR1P51861 262 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 FAM69CQ0P6D2 419 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 FBXO31Q5XUX0 539 aaPredicted RBP17.01■□□□□ 0.31
VPS36-207ENST00000611132 RUFY3Q7L099 469 aa17.01■□□□□ 0.31
VPS36-207ENST00000611132 RDXP35241 583 aaKnown RBP17■□□□□ 0.31
VPS36-207ENST00000611132 PLEKHF1Q96S99 279 aa17■□□□□ 0.31
VPS36-207ENST00000611132 PBRM1Q86U86 1689 aa17■□□□□ 0.31
VPS36-207ENST00000611132 RRP12Q5JTH9 1297 aaKnown RBP17■□□□□ 0.31
VPS36-207ENST00000611132 LMAN1P49257 510 aa17■□□□□ 0.31
VPS36-207ENST00000611132 G2E3Q7L622 706 aa17■□□□□ 0.31
VPS36-207ENST00000611132 CEP126Q9P2H0 1117 aa17■□□□□ 0.31
VPS36-207ENST00000611132 CREB3L3Q68CJ9 461 aa17■□□□□ 0.31
VPS36-207ENST00000611132 MRPS27Q92552 414 aaKnown RBP17■□□□□ 0.31
VPS36-207ENST00000611132 SRRTQ9BXP5 876 aaKnown RBP17■□□□□ 0.31
VPS36-207ENST00000611132 ARFGAP3Q9NP61 516 aa17■□□□□ 0.31
VPS36-207ENST00000611132 MAGEC2Q9UBF1 373 aaPredicted RBP17■□□□□ 0.31
VPS36-207ENST00000611132 SGSM2O43147 1006 aa16.99■□□□□ 0.31
VPS36-207ENST00000611132 ZNF75DP51815 510 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms