RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 DBF4Q9UBU7 674 aaPredicted RBP25.03■■□□□ 1.6
UPF1-212ENST00000601689 MAP3K15Q6ZN16 1313 aa25.03■■□□□ 1.6
UPF1-212ENST00000601689 AFDNP55196 1824 aaKnown RBP25.02■■□□□ 1.6
UPF1-212ENST00000601689 ST5P78524 1137 aa25.02■■□□□ 1.6
UPF1-212ENST00000601689 PDZRN3Q9UPQ7 1066 aa25.02■■□□□ 1.6
UPF1-212ENST00000601689 NIP7Q9Y221 180 aaKnown RBP eCLIP25.02■■□□□ 1.6
UPF1-212ENST00000601689 KRT24Q2M2I5 525 aa25.01■■□□□ 1.59
UPF1-212ENST00000601689 CNBD1Q8NA66 436 aa25.01■■□□□ 1.59
UPF1-212ENST00000601689 GTF2E1P29083 439 aaPredicted RBP25■■□□□ 1.59
UPF1-212ENST00000601689 TPTE2Q6XPS3 522 aa25■■□□□ 1.59
UPF1-212ENST00000601689 NBPF5PQ86XG9 351 aaPredicted RBP25■■□□□ 1.59
UPF1-212ENST00000601689 A0A0G2JLW4 131 aa24.99■■□□□ 1.59
UPF1-212ENST00000601689 PDE6BP35913 854 aa24.99■■□□□ 1.59
UPF1-212ENST00000601689 HYPKQ9NX55 129 aa24.99■■□□□ 1.59
UPF1-212ENST00000601689 PIM2Q9P1W9 311 aa24.99■■□□□ 1.59
UPF1-212ENST00000601689 CHD4Q14839 1912 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 ELL2O00472 640 aaPredicted RBP24.98■■□□□ 1.59
UPF1-212ENST00000601689 AIMP1Q12904 312 aaKnown RBP24.98■■□□□ 1.59
UPF1-212ENST00000601689 HSP90AB3PQ58FF7 597 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 CCDC30Q5VVM6 783 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 NYXQ9GZU5 481 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 ZBTB3Q9H5J0 574 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 NUP98P52948 1817 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 N4BP2Q86UW6 1770 aaPredicted RBP24.98■■□□□ 1.59
UPF1-212ENST00000601689 NRXN2Q9P2S2 1712 aa24.98■■□□□ 1.59
UPF1-212ENST00000601689 H0YIN7 160 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 DPEP1P16444 411 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 GOLGA2Q08379 1002 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 TTLL7Q6ZT98 887 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 COPS6Q7L5N1 327 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 MYH16Q9H6N6 1097 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 CHPF2Q9P2E5 772 aa24.97■■□□□ 1.59
UPF1-212ENST00000601689 PXDNLA1KZ92 1463 aa24.96■■□□□ 1.59
UPF1-212ENST00000601689 PDIA6Q15084 440 aa24.96■■□□□ 1.59
UPF1-212ENST00000601689 HLFQ16534 295 aa24.96■■□□□ 1.59
UPF1-212ENST00000601689 GIGYF2Q6Y7W6 1299 aaKnown RBP24.96■■□□□ 1.59
UPF1-212ENST00000601689 BRIP1Q9BX63 1249 aa24.96■■□□□ 1.59
UPF1-212ENST00000601689 BCS1LQ9Y276 419 aa24.96■■□□□ 1.59
UPF1-212ENST00000601689 ANXA1P04083 346 aa24.95■■□□□ 1.58
UPF1-212ENST00000601689 XAGE3Q8WTP9 111 aa24.95■■□□□ 1.58
UPF1-212ENST00000601689 TSR2Q969E8 191 aaKnown RBP24.95■■□□□ 1.58
UPF1-212ENST00000601689 STK31Q9BXU1 1019 aa24.95■■□□□ 1.58
UPF1-212ENST00000601689 YY1P25490 414 aa24.94■■□□□ 1.58
UPF1-212ENST00000601689 PRR5LQ6MZQ0 368 aa24.94■■□□□ 1.58
UPF1-212ENST00000601689 WWC3Q9ULE0 1092 aa24.94■■□□□ 1.58
UPF1-212ENST00000601689 PROSER3Q2NL68 480 aa24.93■■□□□ 1.58
UPF1-212ENST00000601689 DALRD3Q5D0E6 543 aaKnown RBP24.93■■□□□ 1.58
UPF1-212ENST00000601689 PPP1R42Q7Z4L9 355 aa24.93■■□□□ 1.58
UPF1-212ENST00000601689 C8orf58Q8NAV2 365 aa24.93■■□□□ 1.58
UPF1-212ENST00000601689 FAM177BA6PVY3 158 aa24.92■■□□□ 1.58
UPF1-212ENST00000601689 YBX3P16989 372 aaKnown RBP eCLIP24.92■■□□□ 1.581e-11■■□□□ 12.2
UPF1-212ENST00000601689 TWISTNBQ3B726 338 aaPredicted RBP24.92■■□□□ 1.58
UPF1-212ENST00000601689 PARP10Q53GL7 1025 aa24.92■■□□□ 1.58
UPF1-212ENST00000601689 C2CD5Q86YS7 1000 aa24.92■■□□□ 1.58
UPF1-212ENST00000601689 ANKRD13DQ6ZTN6 518 aa24.91■■□□□ 1.58
UPF1-212ENST00000601689 ATP10DQ9P241 1426 aa24.91■■□□□ 1.58
UPF1-212ENST00000601689 DDX58O95786 925 aaKnown RBP24.9■■□□□ 1.58
UPF1-212ENST00000601689 CHRNA5P30532 468 aa24.9■■□□□ 1.58
UPF1-212ENST00000601689 LRP10Q7Z4F1 713 aa24.9■■□□□ 1.58
UPF1-212ENST00000601689 PLBD2Q8NHP8 589 aa24.9■■□□□ 1.58
UPF1-212ENST00000601689 FANCIQ9NVI1 1328 aa24.89■■□□□ 1.58
UPF1-212ENST00000601689 GPTP24298 496 aa24.89■■□□□ 1.58
UPF1-212ENST00000601689 RIC3Q7Z5B4 369 aa24.88■■□□□ 1.57
UPF1-212ENST00000601689 TTLL6Q8N841 843 aa24.88■■□□□ 1.57
UPF1-212ENST00000601689 ZNF622Q969S3 477 aaKnown RBP eCLIP24.88■■□□□ 1.573e-7■■■□□ 15.5
UPF1-212ENST00000601689 KIAA1551Q9HCM1 1747 aa24.88■■□□□ 1.57
UPF1-212ENST00000601689 GOLGB1Q14789 3259 aaKnown RBP24.87■■□□□ 1.57
UPF1-212ENST00000601689 KCNA3P22001 575 aa24.87■■□□□ 1.57
UPF1-212ENST00000601689 ZNF34Q8IZ26 560 aa24.87■■□□□ 1.57
UPF1-212ENST00000601689 MIER1Q8N108 512 aa24.87■■□□□ 1.57
UPF1-212ENST00000601689 BRCA1P38398 1863 aaKnown RBP24.87■■□□□ 1.57
UPF1-212ENST00000601689 CACNA1FO60840 1977 aa24.86■■□□□ 1.57
UPF1-212ENST00000601689 IBTKQ9P2D0 1353 aaPredicted RBP24.86■■□□□ 1.57
UPF1-212ENST00000601689 TCIRG1Q13488 830 aa24.86■■□□□ 1.57
UPF1-212ENST00000601689 CCDC24Q8N4L8 307 aa24.86■■□□□ 1.57
UPF1-212ENST00000601689 TSPYL6Q8N831 410 aa24.86■■□□□ 1.57
UPF1-212ENST00000601689 CNKSR1Q969H4 720 aa24.85■■□□□ 1.57
UPF1-212ENST00000601689 UTP14AQ9BVJ6 771 aaKnown RBP24.85■■□□□ 1.57
UPF1-212ENST00000601689 UTRNP46939 3433 aa24.85■■□□□ 1.57
UPF1-212ENST00000601689 ARFGEF1Q9Y6D6 1849 aa24.84■■□□□ 1.57
UPF1-212ENST00000601689 ARHGAP27Q6ZUM4 889 aa24.84■■□□□ 1.57
UPF1-212ENST00000601689 MASTLQ96GX5 879 aa24.84■■□□□ 1.57
UPF1-212ENST00000601689 RNF123Q5XPI4 1314 aa24.84■■□□□ 1.57
UPF1-212ENST00000601689 ANKRD36CQ5JPF3 1778 aa24.83■■□□□ 1.57
UPF1-212ENST00000601689 E9PSI1 815 aa24.83■■□□□ 1.57
UPF1-212ENST00000601689 EXOSC9Q06265 439 aaKnown RBP24.83■■□□□ 1.57
UPF1-212ENST00000601689 SUSD4Q5VX71 490 aa24.83■■□□□ 1.57
UPF1-212ENST00000601689 ANKRD31Q8N7Z5 1873 aa24.83■■□□□ 1.56
UPF1-212ENST00000601689 DLEC1Q9Y238 1755 aa24.82■■□□□ 1.56
UPF1-212ENST00000601689 STYK1Q6J9G0 422 aa24.82■■□□□ 1.56
UPF1-212ENST00000601689 NPR1P16066 1061 aa24.81■■□□□ 1.56
UPF1-212ENST00000601689 NUTM1Q86Y26 1132 aa24.81■■□□□ 1.56
UPF1-212ENST00000601689 PHAXQ9H814 394 aaKnown RBP24.81■■□□□ 1.56
UPF1-212ENST00000601689 UBN2Q6ZU65 1347 aa24.81■■□□□ 1.56
UPF1-212ENST00000601689 SLC4A2P04920 1241 aa24.8■■□□□ 1.56
UPF1-212ENST00000601689 SRGNP10124 158 aa24.8■■□□□ 1.56
UPF1-212ENST00000601689 ALDH1B1P30837 517 aa24.8■■□□□ 1.56
UPF1-212ENST00000601689 NLRP3Q96P20 1036 aa24.8■■□□□ 1.56
UPF1-212ENST00000601689 TRMT112Q9UI30 125 aaKnown RBP24.8■■□□□ 1.56
UPF1-212ENST00000601689 ERFEQ4G0M1 354 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms