RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 USHBP1Q8N6Y0 703 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 UBAC1Q9BSL1 405 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 PRIM1P49642 420 aaKnown RBP7.5□□□□□ -1.21
SMAD4-212ENST00000591126 TMEM132AQ24JP5 1023 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 BARGINQ6ZT62 677 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 MKNK2Q9HBH9 465 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 BCS1LQ9Y276 419 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 CAMSAP1Q5T5Y3 1602 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 MCM2P49736 904 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 GBP4Q96PP9 640 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 AS3MTQ9HBK9 375 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 PICK1Q9NRD5 415 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 EXOSC9Q06265 439 aaKnown RBP7.49□□□□□ -1.21
SMAD4-212ENST00000591126 TMOD4Q9NZQ9 345 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 ADAMTS8Q9UP79 889 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 SUPT16HQ9Y5B9 1047 aaKnown RBP7.49□□□□□ -1.21
SMAD4-212ENST00000591126 CCDC93Q567U6 631 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 VSIG10Q8N0Z9 540 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 SLC52A2Q9HAB3 445 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 ATP2B4P23634 1241 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 SSFA2P28290 1259 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 ATP2B2Q01814 1243 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 KSR2Q6VAB6 950 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 SEC63Q9UGP8 760 aaKnown RBP7.49□□□□□ -1.21
SMAD4-212ENST00000591126 MAP3K19Q56UN5 1328 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 GNAT2P19087 354 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 IL15P40933 162 aaPredicted RBP7.49□□□□□ -1.21
SMAD4-212ENST00000591126 C2CD5Q86YS7 1000 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 CCDC191Q8NCU4 936 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 PIM2Q9P1W9 311 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 DENND2AQ9ULE3 1009 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 AATKQ6ZMQ8 1374 aa7.49□□□□□ -1.21
SMAD4-212ENST00000591126 EIF4A2Q14240 407 aaKnown RBP7.48□□□□□ -1.21
SMAD4-212ENST00000591126 APBB1IPQ7Z5R6 666 aaPredicted RBP7.48□□□□□ -1.21
SMAD4-212ENST00000591126 TTC6Q86TZ1 520 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 IQCA1Q86XH1 822 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 WDR66Q8TBY9 1149 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 CEP170BQ9Y4F5 1589 aaPredicted RBP7.48□□□□□ -1.21
SMAD4-212ENST00000591126 MYO3AQ8NEV4 1616 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 CCDC69A6NI79 296 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 IGSF3O75054 1194 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 TRIM37O94972 964 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 DESP17661 470 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 SULF1Q8IWU6 871 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ANO2Q9NQ90 1003 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 NOL7Q9UMY1 257 aaKnown RBP7.48□□□□□ -1.21
SMAD4-212ENST00000591126 SRGAP3O43295 1099 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ARMC9Q7Z3E5 817 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 MPNDQ8N594 471 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 PLBD2Q8NHP8 589 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ARHGAP45Q92619 1136 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ZBTB3Q9H5J0 574 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 BBOX1O75936 387 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 SUPT20HL1Q3ZLR7 823 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 USP48Q86UV5 1035 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ARHGEF25Q86VW2 580 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 ABCF2Q9UG63 623 aa7.48□□□□□ -1.21
SMAD4-212ENST00000591126 PPP1R12BO60237 982 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 PDE8AO60658 829 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 PIP4K2AP48426 406 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 IMMTQ16891 758 aaKnown RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 TSR1Q2NL82 804 aaKnown RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 ZNF219Q9P2Y4 722 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 CSADQ9Y600 493 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 RIMS1Q86UR5 1692 aaKnown RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 DIP2CQ9Y2E4 1556 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 PDCP20941 246 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 KIF5BP33176 963 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 HSP90AB2PQ58FF8 381 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 LINS1Q8NG48 757 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 DDX21Q9NR30 783 aaKnown RBP eCLIP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 BIN2Q9UBW5 565 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 KIF1BO60333 1816 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 KIAA0232Q92628 1395 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 CDC42BPGQ6DT37 1551 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 REREQ9P2R6 1566 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 HMGB1P09429 215 aaKnown RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 TPM1P09493 284 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 IL6STP40189 918 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 GNAQP50148 359 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 B4GALNT3Q6L9W6 998 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 SAMD1Q6SPF0 538 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 CDK5RAP3Q96JB5 506 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 SPC25Q9HBM1 224 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 FANCIQ9NVI1 1328 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 GTF3C3Q9Y5Q9 886 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 GJA3Q9Y6H8 435 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 IVNS1ABPQ9Y6Y0 642 aa7.47□□□□□ -1.21
SMAD4-212ENST00000591126 U3KPZ7 1027 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-212ENST00000591126 ZNF76P36508 570 aa7.46□□□□□ -1.21
SMAD4-212ENST00000591126 FRMPD1Q5SYB0 1578 aa7.46□□□□□ -1.21
SMAD4-212ENST00000591126 MYO3BQ8WXR4 1341 aa7.46□□□□□ -1.21
SMAD4-212ENST00000591126 KIF4AO95239 1232 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 GPTP24298 496 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 NT5C2P49902 561 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 ZNF790Q6PG37 636 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 CLEC4GQ6UXB4 293 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 EYA1Q99502 592 aa7.46□□□□□ -1.22
SMAD4-212ENST00000591126 BMP2KQ9NSY1 1161 aaPredicted RBP7.46□□□□□ -1.22
SMAD4-212ENST00000591126 IRS4O14654 1257 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms