RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 CYLDQ9NQC7 956 aa8.31□□□□□ -1.08
SMAD4-208ENST00000589706 TMPRSS4Q9NRS4 437 aa8.31□□□□□ -1.08
SMAD4-208ENST00000589706 IGSF5Q9NSI5 407 aa8.31□□□□□ -1.08
SMAD4-208ENST00000589706 ATAD2Q6PL18 1390 aa8.31□□□□□ -1.08
SMAD4-208ENST00000589706 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.3□□□□□ -1.08
SMAD4-208ENST00000589706 STAU1O95793 577 aaKnown RBP8.3□□□□□ -1.08
SMAD4-208ENST00000589706 FSHRP23945 695 aa8.3□□□□□ -1.08
SMAD4-208ENST00000589706 GRM5P41594 1212 aa8.3□□□□□ -1.08
SMAD4-208ENST00000589706 HELQQ8TDG4 1101 aa8.3□□□□□ -1.08
SMAD4-208ENST00000589706 RAPGEF6Q8TEU7 1601 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 ITGBL1O95965 494 aaPredicted RBP8.29□□□□□ -1.08
SMAD4-208ENST00000589706 INHAP05111 366 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 EPHA4P54764 986 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 RC3H1Q5TC82 1133 aaKnown RBP8.29□□□□□ -1.08
SMAD4-208ENST00000589706 ZSCAN29Q8IWY8 852 aaPredicted RBP8.29□□□□□ -1.08
SMAD4-208ENST00000589706 MPNDQ8N594 471 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 ETNK1Q9HBU6 452 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 SERTAD1Q9UHV2 236 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 PTPRKQ15262 1439 aa8.29□□□□□ -1.08
SMAD4-208ENST00000589706 TCOF1Q13428 1488 aaKnown RBP8.28□□□□□ -1.08
SMAD4-208ENST00000589706 IGSF3O75054 1194 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 FAM13AO94988 1023 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 CD2BP2O95400 341 aaKnown RBP8.28□□□□□ -1.08
SMAD4-208ENST00000589706 NPR3P17342 541 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 ZNF784Q8NCA9 323 aaPredicted RBP8.28□□□□□ -1.08
SMAD4-208ENST00000589706 UBE2Q2Q8WVN8 375 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 VTI1AQ96AJ9 217 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 SLC4A9Q96Q91 983 aa8.28□□□□□ -1.08
SMAD4-208ENST00000589706 TSPAN10Q9H1Z9 355 aaPredicted RBP8.28□□□□□ -1.08
SMAD4-208ENST00000589706 PLA2R1Q13018 1463 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 GNRH1P01148 92 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 CYP2U1Q7Z449 544 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 FBXO33Q7Z6M2 555 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 AFAP1Q8N556 730 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.27□□□□□ -1.09
SMAD4-208ENST00000589706 ALKQ9UM73 1620 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 CPS1P31327 1500 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 NPATQ14207 1427 aa8.27□□□□□ -1.09
SMAD4-208ENST00000589706 NUP153P49790 1475 aaKnown RBP8.26□□□□□ -1.09
SMAD4-208ENST00000589706 LILRA1O75019 489 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 ESCO1Q5FWF5 840 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 PPP1R18Q6NYC8 613 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 CDAN1Q8IWY9 1227 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 CCDC116Q8IYX3 515 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.26□□□□□ -1.09
SMAD4-208ENST00000589706 TLL2Q9Y6L7 1015 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 PLCH2O75038 1416 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 CNTLNQ9NXG0 1405 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 SHANK2Q9UPX8 1470 aa8.26□□□□□ -1.09
SMAD4-208ENST00000589706 A0A1W2PRU2 124 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 SIAH2O43255 324 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 PPP1R12BO60237 982 aaPredicted RBP8.25□□□□□ -1.09
SMAD4-208ENST00000589706 NR5A1Q13285 461 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 COL19A1Q14993 1142 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 PPP1R26Q5T8A7 1209 aaPredicted RBP8.25□□□□□ -1.09
SMAD4-208ENST00000589706 EFCAB2Q5VUJ9 269 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 RGL4Q8IZJ4 473 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 HCSTQ9UBK5 93 aa8.25□□□□□ -1.09
SMAD4-208ENST00000589706 SUPT6HQ7KZ85 1726 aaKnown RBP8.25□□□□□ -1.09
SMAD4-208ENST00000589706 AGLP35573 1532 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 ZMYM3Q14202 1370 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 SETD1AO15047 1707 aaKnown RBP8.24□□□□□ -1.09
SMAD4-208ENST00000589706 ADH1CP00326 375 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 MPSTP25325 297 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 FOXK2Q01167 660 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 TAGLNQ01995 201 aaKnown RBP8.24□□□□□ -1.09
SMAD4-208ENST00000589706 C16orf46Q6P387 395 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 STAG2Q8N3U4 1231 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 SAP130Q9H0E3 1048 aa8.24□□□□□ -1.09
SMAD4-208ENST00000589706 SCHIP1Q9P0W5 487 aaPredicted RBP8.24□□□□□ -1.09
SMAD4-208ENST00000589706 REREQ9P2R6 1566 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 DIP2CQ9Y2E4 1556 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 A6NJY4 79 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 ADD1P35611 737 aaKnown RBP8.23□□□□□ -1.09
SMAD4-208ENST00000589706 SMTNP53814 917 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 SLC9A9Q8IVB4 645 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 C2orf49Q9BVC5 232 aaPredicted RBP8.23□□□□□ -1.09
SMAD4-208ENST00000589706 RBCK1Q9BYM8 510 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 ZNF518AQ6AHZ1 1483 aa8.23□□□□□ -1.09
SMAD4-208ENST00000589706 VAMP1P23763 118 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 MTFR1Q15390 333 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 EAPPQ56P03 285 aaPredicted RBP8.22□□□□□ -1.09
SMAD4-208ENST00000589706 TBCELQ5QJ74 424 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 ERICH6BQ5W0A0 696 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 LIAT1Q6ZQX7 453 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 PGPEP1Q9NXJ5 209 aa8.22□□□□□ -1.09
SMAD4-208ENST00000589706 ZNF142P52746 1687 aaPredicted RBP8.21□□□□□ -1.09
SMAD4-208ENST00000589706 NDUFB5O43674 189 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 XAGE2Q96GT9 111 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 RAB6BQ9NRW1 208 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 EMILIN1Q9Y6C2 1016 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 KDM5CP41229 1560 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 CEP170BQ9Y4F5 1589 aaPredicted RBP8.21□□□□□ -1.1
SMAD4-208ENST00000589706 MYO3AQ8NEV4 1616 aa8.21□□□□□ -1.1
SMAD4-208ENST00000589706 NR3C2P08235 984 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 TCF3P15923 654 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 PSMA6P60900 246 aaKnown RBP8.2□□□□□ -1.1
SMAD4-208ENST00000589706 COX20Q5RI15 118 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 ALKBH2Q6NS38 261 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 TMC7Q7Z402 723 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms