RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KRT24Q2M2I5 525 aa31.15■■■□□ 2.58
SHMT1-206ENST00000579558 KIF6Q6ZMV9 814 aa31.15■■■□□ 2.58
SHMT1-206ENST00000579558 ARFGEF1Q9Y6D6 1849 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 ANKRD31Q8N7Z5 1873 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 HLFQ16534 295 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 TTLL7Q6ZT98 887 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 C2CD5Q86YS7 1000 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 CCDC24Q8N4L8 307 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 NIP7Q9Y221 180 aaKnown RBP eCLIP31.14■■■□□ 2.58
SHMT1-206ENST00000579558 MAP3K15Q6ZN16 1313 aa31.14■■■□□ 2.58
SHMT1-206ENST00000579558 DLEC1Q9Y238 1755 aa31.13■■■□□ 2.57
SHMT1-206ENST00000579558 NECTIN2Q92692 538 aa31.13■■■□□ 2.57
SHMT1-206ENST00000579558 BRIP1Q9BX63 1249 aa31.13■■■□□ 2.57
SHMT1-206ENST00000579558 ERVV-1B6SEH8 477 aa31.12■■■□□ 2.57
SHMT1-206ENST00000579558 ST5P78524 1137 aa31.12■■■□□ 2.57
SHMT1-206ENST00000579558 NBPF5PQ86XG9 351 aaPredicted RBP31.12■■■□□ 2.57
SHMT1-206ENST00000579558 MBIPQ9NS73 344 aa31.12■■■□□ 2.57
SHMT1-206ENST00000579558 H0YIN7 160 aa31.11■■■□□ 2.57
SHMT1-206ENST00000579558 PDIA6Q15084 440 aa31.11■■■□□ 2.57
SHMT1-206ENST00000579558 IFT57Q9NWB7 429 aa31.11■■■□□ 2.57
SHMT1-206ENST00000579558 ZNF853P0CG23 659 aa31.1■■■□□ 2.57
SHMT1-206ENST00000579558 PDE6BP35913 854 aa31.1■■■□□ 2.57
SHMT1-206ENST00000579558 ARHGAP27Q6ZUM4 889 aa31.1■■■□□ 2.57
SHMT1-206ENST00000579558 ZBTB3Q9H5J0 574 aa31.1■■■□□ 2.57
SHMT1-206ENST00000579558 NUP98P52948 1817 aa31.1■■■□□ 2.57
SHMT1-206ENST00000579558 ANXA1P04083 346 aa31.09■■■□□ 2.57
SHMT1-206ENST00000579558 GNAI1P63096 354 aa31.09■■■□□ 2.57
SHMT1-206ENST00000579558 PROSER3Q2NL68 480 aa31.09■■■□□ 2.57
SHMT1-206ENST00000579558 SENP3-EIF4A1A0A087X0R7 540 aa31.08■■■□□ 2.57
SHMT1-206ENST00000579558 LRP10Q7Z4F1 713 aa31.08■■■□□ 2.57
SHMT1-206ENST00000579558 PDZRN3Q9UPQ7 1066 aa31.08■■■□□ 2.57
SHMT1-206ENST00000579558 FAM177BA6PVY3 158 aa31.07■■■□□ 2.56
SHMT1-206ENST00000579558 HOXB7P09629 217 aa31.07■■■□□ 2.56
SHMT1-206ENST00000579558 TPTE2Q6XPS3 522 aa31.06■■■□□ 2.56
SHMT1-206ENST00000579558 COL11A2P13942 1736 aaPredicted RBP31.06■■■□□ 2.56
SHMT1-206ENST00000579558 ATP10DQ9P241 1426 aa31.06■■■□□ 2.56
SHMT1-206ENST00000579558 HDGFL1Q5TGJ6 251 aa31.05■■■□□ 2.56
SHMT1-206ENST00000579558 DUSP27Q5VZP5 1158 aa31.05■■■□□ 2.56
SHMT1-206ENST00000579558 TTLL6Q8N841 843 aa31.05■■■□□ 2.56
SHMT1-206ENST00000579558 DDX21Q9NR30 783 aaKnown RBP eCLIP31.05■■■□□ 2.56
SHMT1-206ENST00000579558 CCDC27Q2M243 656 aa31.04■■■□□ 2.56
SHMT1-206ENST00000579558 ZNF622Q969S3 477 aaKnown RBP eCLIP31.04■■■□□ 2.56
SHMT1-206ENST00000579558 ADCY9O60503 1353 aa31.03■■■□□ 2.56
SHMT1-206ENST00000579558 GIGYF2Q6Y7W6 1299 aaKnown RBP31.02■■■□□ 2.56
SHMT1-206ENST00000579558 CHPF2Q9P2E5 772 aa31.02■■■□□ 2.56
SHMT1-206ENST00000579558 GPTP24298 496 aa31.01■■■□□ 2.55
SHMT1-206ENST00000579558 GTF2E1P29083 439 aaPredicted RBP31.01■■■□□ 2.55
SHMT1-206ENST00000579558 AIMP1Q12904 312 aaKnown RBP31.01■■■□□ 2.55
SHMT1-206ENST00000579558 COPS6Q7L5N1 327 aa31.01■■■□□ 2.55
SHMT1-206ENST00000579558 XAGE3Q8WTP9 111 aa31.01■■■□□ 2.55
SHMT1-206ENST00000579558 WWC1Q8IX03 1113 aa31■■■□□ 2.55
SHMT1-206ENST00000579558 NYXQ9GZU5 481 aa31■■■□□ 2.55
SHMT1-206ENST00000579558 FAM9BQ8IZU0 186 aa30.99■■■□□ 2.55
SHMT1-206ENST00000579558 UBN2Q6ZU65 1347 aa30.98■■■□□ 2.55
SHMT1-206ENST00000579558 NCBP3Q53F19 620 aaKnown RBP30.98■■■□□ 2.55
SHMT1-206ENST00000579558 ZNF34Q8IZ26 560 aa30.98■■■□□ 2.55
SHMT1-206ENST00000579558 DBF4Q9UBU7 674 aaPredicted RBP30.98■■■□□ 2.55
SHMT1-206ENST00000579558 SRGNP10124 158 aa30.97■■■□□ 2.55
SHMT1-206ENST00000579558 STYK1Q6J9G0 422 aa30.97■■■□□ 2.55
SHMT1-206ENST00000579558 ELL2O00472 640 aaPredicted RBP30.96■■■□□ 2.55
SHMT1-206ENST00000579558 MASTLQ96GX5 879 aa30.96■■■□□ 2.55
SHMT1-206ENST00000579558 IBTKQ9P2D0 1353 aaPredicted RBP30.95■■■□□ 2.55
SHMT1-206ENST00000579558 SUSD4Q5VX71 490 aa30.95■■■□□ 2.55
SHMT1-206ENST00000579558 NUTM1Q86Y26 1132 aa30.95■■■□□ 2.55
SHMT1-206ENST00000579558 CNKSR1Q969H4 720 aa30.95■■■□□ 2.55
SHMT1-206ENST00000579558 CACNA1SQ13698 1873 aa30.94■■■□□ 2.54
SHMT1-206ENST00000579558 C8orf58Q8NAV2 365 aa30.94■■■□□ 2.54
SHMT1-206ENST00000579558 SALL2Q9Y467 1007 aaPredicted RBP30.94■■■□□ 2.54
SHMT1-206ENST00000579558 ABCC12Q96J65 1359 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 ANKRD36CQ5JPF3 1778 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 ERFEQ4G0M1 354 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 PARP10Q53GL7 1025 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 C9orf131Q5VYM1 1079 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 TSR2Q969E8 191 aaKnown RBP30.93■■■□□ 2.54
SHMT1-206ENST00000579558 HYPKQ9NX55 129 aa30.93■■■□□ 2.54
SHMT1-206ENST00000579558 KLRG2A4D1S0 409 aaPredicted RBP30.92■■■□□ 2.54
SHMT1-206ENST00000579558 HSP90AB3PQ58FF7 597 aa30.92■■■□□ 2.54
SHMT1-206ENST00000579558 PPP1R42Q7Z4L9 355 aa30.92■■■□□ 2.54
SHMT1-206ENST00000579558 ZNF526Q8TF50 670 aaPredicted RBP30.92■■■□□ 2.54
SHMT1-206ENST00000579558 ZNF219Q9P2Y4 722 aaPredicted RBP30.92■■■□□ 2.54
SHMT1-206ENST00000579558 IL16Q14005 1332 aa30.92■■■□□ 2.54
SHMT1-206ENST00000579558 TNRC6CQ9HCJ0 1690 aaKnown RBP30.91■■■□□ 2.54
SHMT1-206ENST00000579558 NPR1P16066 1061 aa30.91■■■□□ 2.54
SHMT1-206ENST00000579558 RASSF7Q02833 373 aa30.91■■■□□ 2.54
SHMT1-206ENST00000579558 ARFGEF2Q9Y6D5 1785 aa30.91■■■□□ 2.54
SHMT1-206ENST00000579558 SLX4Q8IY92 1834 aa30.9■■■□□ 2.54
SHMT1-206ENST00000579558 C21orf2O43822 256 aa30.9■■■□□ 2.54
SHMT1-206ENST00000579558 NTSR2O95665 410 aa30.9■■■□□ 2.54
SHMT1-206ENST00000579558 PRPF40BQ6NWY9 871 aaKnown RBP30.9■■■□□ 2.54
SHMT1-206ENST00000579558 GPBP1L1Q9HC44 474 aaPredicted RBP30.9■■■□□ 2.54
SHMT1-206ENST00000579558 SBF1O95248 1867 aa30.89■■■□□ 2.54
SHMT1-206ENST00000579558 PLBD2Q8NHP8 589 aa30.89■■■□□ 2.54
SHMT1-206ENST00000579558 RNF181Q9P0P0 153 aa30.89■■■□□ 2.54
SHMT1-206ENST00000579558 TCIRG1Q13488 830 aa30.88■■■□□ 2.53
SHMT1-206ENST00000579558 ANKRD13DQ6ZTN6 518 aa30.87■■■□□ 2.53
SHMT1-206ENST00000579558 TSPYL6Q8N831 410 aa30.87■■■□□ 2.53
SHMT1-206ENST00000579558 UTP14AQ9BVJ6 771 aaKnown RBP30.87■■■□□ 2.53
SHMT1-206ENST00000579558 CHMP4AQ9BY43 222 aa30.87■■■□□ 2.53
SHMT1-206ENST00000579558 RIC1Q4ADV7 1423 aa30.87■■■□□ 2.53
SHMT1-206ENST00000579558 C1QTNF8P60827 252 aa30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms