RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RGPD5Q99666 1765 aa27.54■■■□□ 2
VPS53-211ENST00000571805 ECHDC1Q9NTX5 307 aa27.53■■■□□ 2
VPS53-211ENST00000571805 SPG7Q9UQ90 795 aa27.53■■■□□ 2
VPS53-211ENST00000571805 HDAC5Q9UQL6 1122 aa27.53■■■□□ 2
VPS53-211ENST00000571805 LINS1Q8NG48 757 aa27.53■■■□□ 2
VPS53-211ENST00000571805 KAZALD1Q96I82 304 aa27.53■■■□□ 2
VPS53-211ENST00000571805 UTYO14607 1347 aa27.53■■■□□ 2
VPS53-211ENST00000571805 ADAMTSL3P82987 1691 aa27.53■■■□□ 2
VPS53-211ENST00000571805 LRSAM1Q6UWE0 723 aa27.52■■■□□ 2
VPS53-211ENST00000571805 KIAA1211Q6ZU35 1233 aa27.52■■■□□ 2
VPS53-211ENST00000571805 KRT28Q7Z3Y7 464 aa27.52■■■□□ 2
VPS53-211ENST00000571805 ERC1Q8IUD2 1116 aa27.52■■■□□ 2
VPS53-211ENST00000571805 DDX21Q9NR30 783 aaKnown RBP eCLIP27.52■■■□□ 2
VPS53-211ENST00000571805 PDIA6Q15084 440 aa27.52■■■□□ 2
VPS53-211ENST00000571805 WDR33Q9C0J8 1336 aaKnown RBP27.5■■□□□ 1.99
VPS53-211ENST00000571805 GRM8O00222 908 aa27.5■■□□□ 1.99
VPS53-211ENST00000571805 AK2P54819 239 aa27.5■■□□□ 1.99
VPS53-211ENST00000571805 SUCLG2Q96I99 432 aa27.5■■□□□ 1.99
VPS53-211ENST00000571805 DIAPH3Q9NSV4 1193 aa27.5■■□□□ 1.99
VPS53-211ENST00000571805 RUFY3Q7L099 469 aa27.49■■□□□ 1.99
VPS53-211ENST00000571805 RPAP1Q9BWH6 1393 aaPredicted RBP27.49■■□□□ 1.99
VPS53-211ENST00000571805 ERBB3P21860 1342 aa27.49■■□□□ 1.99
VPS53-211ENST00000571805 SYCE3A1L190 88 aa27.49■■□□□ 1.99
VPS53-211ENST00000571805 IFIT2P09913 472 aaKnown RBP27.49■■□□□ 1.99
VPS53-211ENST00000571805 RUFY2Q8WXA3 655 aa27.49■■□□□ 1.99
VPS53-211ENST00000571805 LIMCH1Q9UPQ0 1083 aa27.48■■□□□ 1.99
VPS53-211ENST00000571805 MST1RQ04912 1400 aa27.48■■□□□ 1.99
VPS53-211ENST00000571805 PTH1RQ03431 593 aa27.48■■□□□ 1.99
VPS53-211ENST00000571805 SASH1O94885 1247 aa27.47■■□□□ 1.99
VPS53-211ENST00000571805 DDX58O95786 925 aaKnown RBP27.47■■□□□ 1.99
VPS53-211ENST00000571805 GPATCH3Q96I76 525 aa27.47■■□□□ 1.99
VPS53-211ENST00000571805 PDLIM2Q96JY6 352 aa27.47■■□□□ 1.99
VPS53-211ENST00000571805 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.47■■□□□ 1.99
VPS53-211ENST00000571805 KCNB2Q92953 911 aa27.46■■□□□ 1.99
VPS53-211ENST00000571805 BICC1Q9H694 974 aaKnown RBP27.46■■□□□ 1.99
VPS53-211ENST00000571805 AIMP1Q12904 312 aaKnown RBP27.46■■□□□ 1.99
VPS53-211ENST00000571805 AACSQ86V21 672 aa27.46■■□□□ 1.99
VPS53-211ENST00000571805 IGKV5-2P06315 115 aa27.45■■□□□ 1.99
VPS53-211ENST00000571805 EVI5LQ96CN4 794 aa27.45■■□□□ 1.99
VPS53-211ENST00000571805 C1orf167Q5SNV9 1468 aa27.45■■□□□ 1.99
VPS53-211ENST00000571805 KIF1AQ12756 1690 aa27.45■■□□□ 1.99
VPS53-211ENST00000571805 ZNF790Q6PG37 636 aa27.45■■□□□ 1.98
VPS53-211ENST00000571805 TCHHQ07283 1943 aa27.44■■□□□ 1.98
VPS53-211ENST00000571805 SCN11AQ9UI33 1791 aa27.44■■□□□ 1.98
VPS53-211ENST00000571805 CASTP20810 708 aaKnown RBP27.44■■□□□ 1.98
VPS53-211ENST00000571805 ZSCAN30Q86W11 494 aa27.44■■□□□ 1.98
VPS53-211ENST00000571805 EAF2Q96CJ1 260 aaPredicted RBP27.44■■□□□ 1.98
VPS53-211ENST00000571805 LARP6Q9BRS8 491 aaKnown RBP27.44■■□□□ 1.98
VPS53-211ENST00000571805 C5P01031 1676 aa27.44■■□□□ 1.98
VPS53-211ENST00000571805 CPA1P15085 419 aa27.43■■□□□ 1.98
VPS53-211ENST00000571805 SLC39A6Q13433 755 aa27.43■■□□□ 1.98
VPS53-211ENST00000571805 USP48Q86UV5 1035 aa27.43■■□□□ 1.98
VPS53-211ENST00000571805 ALS2Q96Q42 1657 aa27.43■■□□□ 1.98
VPS53-211ENST00000571805 GADD45BO75293 160 aaPredicted RBP27.43■■□□□ 1.98
VPS53-211ENST00000571805 ZC3H6P61129 1189 aaKnown RBP27.43■■□□□ 1.98
VPS53-211ENST00000571805 FOXD4L6Q3SYB3 417 aaPredicted RBP27.43■■□□□ 1.98
VPS53-211ENST00000571805 FOXD4L3Q6VB84 417 aaPredicted RBP27.43■■□□□ 1.98
VPS53-211ENST00000571805 SLC52A2Q9HAB3 445 aa27.43■■□□□ 1.98
VPS53-211ENST00000571805 KDM6AO15550 1401 aaPredicted RBP27.43■■□□□ 1.98
VPS53-211ENST00000571805 PROSER2Q86WR7 435 aaPredicted RBP27.42■■□□□ 1.98
VPS53-211ENST00000571805 GDPD2Q9HCC8 539 aa27.42■■□□□ 1.98
VPS53-211ENST00000571805 G3BP1Q13283 466 aaKnown RBP eCLIP27.42■■□□□ 1.98
VPS53-211ENST00000571805 ADCK5Q3MIX3 580 aa27.42■■□□□ 1.98
VPS53-211ENST00000571805 NAP1L5Q96NT1 182 aaPredicted RBP27.42■■□□□ 1.98
VPS53-211ENST00000571805 TM6SF1Q9BZW5 370 aa27.42■■□□□ 1.98
VPS53-211ENST00000571805 NECTIN1Q15223 517 aa27.41■■□□□ 1.98
VPS53-211ENST00000571805 HS1BP3Q53T59 392 aa27.41■■□□□ 1.98
VPS53-211ENST00000571805 PRPF40BQ6NWY9 871 aaKnown RBP27.41■■□□□ 1.98
VPS53-211ENST00000571805 LARP1Q6PKG0 1096 aaKnown RBP27.41■■□□□ 1.98
VPS53-211ENST00000571805 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.41■■□□□ 1.98
VPS53-211ENST00000571805 NPHP3Q7Z494 1330 aa27.41■■□□□ 1.98
VPS53-211ENST00000571805 TMEM87AQ8NBN3 555 aa27.41■■□□□ 1.98
VPS53-211ENST00000571805 ZSWIM6Q9HCJ5 1215 aa27.41■■□□□ 1.98
VPS53-211ENST00000571805 LARGE1O95461 756 aa27.4■■□□□ 1.98
VPS53-211ENST00000571805 ZSCAN22P10073 491 aaPredicted RBP27.4■■□□□ 1.98
VPS53-211ENST00000571805 VPS53Q5VIR6 699 aa27.4■■□□□ 1.98
VPS53-211ENST00000571805 RIC3Q7Z5B4 369 aa27.4■■□□□ 1.98
VPS53-211ENST00000571805 RAPGEF4Q8WZA2 1011 aa27.4■■□□□ 1.98
VPS53-211ENST00000571805 SYT1P21579 422 aa27.4■■□□□ 1.98
VPS53-211ENST00000571805 JAKMIP1Q96N16 626 aaKnown RBP27.39■■□□□ 1.98
VPS53-211ENST00000571805 CCDC8Q9H0W5 538 aaPredicted RBP27.39■■□□□ 1.98
VPS53-211ENST00000571805 CCDC171Q6TFL3 1326 aa27.39■■□□□ 1.98
VPS53-211ENST00000571805 NEURL1BA8MQ27 555 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 PHKG2P15735 406 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 STX6O43752 255 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 NFATC2IPQ8NCF5 419 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 SYAP1Q96A49 352 aaPredicted RBP27.38■■□□□ 1.97
VPS53-211ENST00000571805 C19orf44Q9H6X5 657 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 SNRKQ9NRH2 765 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 PDRG1Q9NUG6 133 aa27.38■■□□□ 1.97
VPS53-211ENST00000571805 TLR7Q9NYK1 1049 aaKnown RBP27.38■■□□□ 1.97
VPS53-211ENST00000571805 MYL6BP14649 208 aa27.37■■□□□ 1.97
VPS53-211ENST00000571805 GCKRQ14397 625 aa27.37■■□□□ 1.97
VPS53-211ENST00000571805 FAM227BQ96M60 508 aa27.37■■□□□ 1.97
VPS53-211ENST00000571805 NLRP2Q9NX02 1062 aa27.37■■□□□ 1.97
VPS53-211ENST00000571805 SMC3Q9UQE7 1217 aa27.37■■□□□ 1.97
VPS53-211ENST00000571805 XAGE3Q8WTP9 111 aa27.36■■□□□ 1.97
VPS53-211ENST00000571805 MAP4K1Q92918 833 aa27.36■■□□□ 1.97
VPS53-211ENST00000571805 CYP46A1Q9Y6A2 500 aa27.36■■□□□ 1.97
VPS53-211ENST00000571805 HIP1O00291 1037 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms