RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 WDR33Q9C0J8 1336 aaKnown RBP22.06■■□□□ 1.12
CLK3-223ENST00000568488 RASSF10A6NK89 507 aa22.05■■□□□ 1.12
CLK3-223ENST00000568488 EPHX2P34913 555 aa22.05■■□□□ 1.12
CLK3-223ENST00000568488 CNTROBQ8N137 903 aa22.05■■□□□ 1.12
CLK3-223ENST00000568488 SLX4Q8IY92 1834 aa22.05■■□□□ 1.12
CLK3-223ENST00000568488 COL11A2P13942 1736 aaPredicted RBP22.05■■□□□ 1.12
CLK3-223ENST00000568488 SCN4AP35499 1836 aa22.03■■□□□ 1.12
CLK3-223ENST00000568488 VIRMAQ69YN4 1812 aaKnown RBP22.03■■□□□ 1.12
CLK3-223ENST00000568488 MTHFSDQ2M296 383 aaKnown RBP22.03■■□□□ 1.12
CLK3-223ENST00000568488 CCDC93Q567U6 631 aa22.03■■□□□ 1.12
CLK3-223ENST00000568488 ZNF277Q9NRM2 450 aaPredicted RBP22.03■■□□□ 1.12
CLK3-223ENST00000568488 ZNF541Q9H0D2 1346 aa22.03■■□□□ 1.12
CLK3-223ENST00000568488 MRC1P22897 1456 aa22.03■■□□□ 1.12
CLK3-223ENST00000568488 PAXIP1Q6ZW49 1069 aaPredicted RBP22.02■■□□□ 1.12
CLK3-223ENST00000568488 PNMA8AQ86V59 439 aaPredicted RBP22.02■■□□□ 1.12
CLK3-223ENST00000568488 CACNA1SQ13698 1873 aa22.01■■□□□ 1.11
CLK3-223ENST00000568488 BEGAINQ9BUH8 593 aa22.01■■□□□ 1.11
CLK3-223ENST00000568488 TEX13AQ9BXU3 409 aaPredicted RBP22.01■■□□□ 1.11
CLK3-223ENST00000568488 IL6STP40189 918 aaPredicted RBP22■■□□□ 1.11
CLK3-223ENST00000568488 GRM1Q13255 1194 aa22■■□□□ 1.11
CLK3-223ENST00000568488 ZNF496Q96IT1 587 aaPredicted RBP22■■□□□ 1.11
CLK3-223ENST00000568488 PCDH10Q9P2E7 1040 aa22■■□□□ 1.11
CLK3-223ENST00000568488 RNF123Q5XPI4 1314 aa22■■□□□ 1.11
CLK3-223ENST00000568488 FKBP4Q02790 459 aaKnown RBP eCLIP21.99■■□□□ 1.11
CLK3-223ENST00000568488 C7orf43Q8WVR3 580 aa21.99■■□□□ 1.11
CLK3-223ENST00000568488 CFAP44Q96MT7 982 aa21.99■■□□□ 1.11
CLK3-223ENST00000568488 CAMTA2O94983 1202 aa21.98■■□□□ 1.11
CLK3-223ENST00000568488 A1BGP04217 495 aa21.98■■□□□ 1.11
CLK3-223ENST00000568488 NPR1P16066 1061 aa21.97■■□□□ 1.11
CLK3-223ENST00000568488 OLFM4Q6UX06 510 aa21.97■■□□□ 1.11
CLK3-223ENST00000568488 NBPF5PQ86XG9 351 aaPredicted RBP21.97■■□□□ 1.11
CLK3-223ENST00000568488 HEG1Q9ULI3 1381 aa21.97■■□□□ 1.11
CLK3-223ENST00000568488 RGS19P49795 217 aa21.96■■□□□ 1.11
CLK3-223ENST00000568488 TEFQ10587 303 aa21.96■■□□□ 1.11
CLK3-223ENST00000568488 ZNF790Q6PG37 636 aa21.96■■□□□ 1.11
CLK3-223ENST00000568488 DDX21Q9NR30 783 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLK3-223ENST00000568488 DZIP3Q86Y13 1208 aaKnown RBP21.95■■□□□ 1.1
CLK3-223ENST00000568488 CAPNS2Q96L46 248 aa21.95■■□□□ 1.1
CLK3-223ENST00000568488 KNSTRNQ9Y448 316 aa21.95■■□□□ 1.1
CLK3-223ENST00000568488 SCN7AQ01118 1682 aa21.95■■□□□ 1.1
CLK3-223ENST00000568488 IARSP41252 1262 aaKnown RBP21.94■■□□□ 1.1
CLK3-223ENST00000568488 ECE1P42892 770 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 CYP4F22Q6NT55 531 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 RTKN2Q8IZC4 609 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 SYNE4Q8N205 404 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 GPR101Q96P66 508 aaPredicted RBP21.94■■□□□ 1.1
CLK3-223ENST00000568488 TSKSQ9UJT2 592 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 GJA3Q9Y6H8 435 aa21.94■■□□□ 1.1
CLK3-223ENST00000568488 FMR1Q06787 632 aaKnown RBP eCLIP21.93■■□□□ 1.1
CLK3-223ENST00000568488 UBR2Q8IWV8 1755 aa21.93■■□□□ 1.1
CLK3-223ENST00000568488 GPC2Q8N158 579 aa21.93■■□□□ 1.1
CLK3-223ENST00000568488 FZD9O00144 591 aa21.92■■□□□ 1.1
CLK3-223ENST00000568488 FMNL2Q96PY5 1086 aa21.92■■□□□ 1.1
CLK3-223ENST00000568488 FAM177BA6PVY3 158 aa21.91■■□□□ 1.1
CLK3-223ENST00000568488 PIP4K2AP48426 406 aaPredicted RBP21.91■■□□□ 1.1
CLK3-223ENST00000568488 IL17REQ8NFR9 667 aa21.91■■□□□ 1.1
CLK3-223ENST00000568488 JDP2Q8WYK2 163 aa21.91■■□□□ 1.1
CLK3-223ENST00000568488 ADAMTSL1Q8N6G6 1762 aa21.91■■□□□ 1.1
CLK3-223ENST00000568488 ARFGEF2Q9Y6D5 1785 aa21.91■■□□□ 1.1
CLK3-223ENST00000568488 LMOD1P29536 600 aaPredicted RBP21.9■■□□□ 1.1
CLK3-223ENST00000568488 EIF6P56537 245 aaKnown RBP21.89■■□□□ 1.09
CLK3-223ENST00000568488 TPTE2Q6XPS3 522 aa21.89■■□□□ 1.09
CLK3-223ENST00000568488 DIAPH1O60610 1272 aaKnown RBP21.88■■□□□ 1.09
CLK3-223ENST00000568488 ALDH1B1P30837 517 aa21.88■■□□□ 1.09
CLK3-223ENST00000568488 ZNF652Q9Y2D9 606 aa21.88■■□□□ 1.09
CLK3-223ENST00000568488 KLRG2A4D1S0 409 aaPredicted RBP21.87■■□□□ 1.09
CLK3-223ENST00000568488 GNAT3A8MTJ3 354 aa21.87■■□□□ 1.09
CLK3-223ENST00000568488 AOC2O75106 756 aa21.87■■□□□ 1.09
CLK3-223ENST00000568488 CLEC4GQ6UXB4 293 aa21.87■■□□□ 1.09
CLK3-223ENST00000568488 TRAF5O00463 557 aa21.86■■□□□ 1.09
CLK3-223ENST00000568488 KCNQ3O43525 872 aa21.86■■□□□ 1.09
CLK3-223ENST00000568488 HSPA5P11021 654 aaKnown RBP21.86■■□□□ 1.09
CLK3-223ENST00000568488 GTF2E1P29083 439 aaPredicted RBP21.86■■□□□ 1.09
CLK3-223ENST00000568488 EIF4G2P78344 907 aaKnown RBP eCLIP21.86■■□□□ 1.09
CLK3-223ENST00000568488 MCOLN1Q9GZU1 580 aa21.86■■□□□ 1.09
CLK3-223ENST00000568488 NIP7Q9Y221 180 aaKnown RBP eCLIP21.86■■□□□ 1.09
CLK3-223ENST00000568488 USP16Q9Y5T5 823 aa21.86■■□□□ 1.09
CLK3-223ENST00000568488 EPS15P42566 896 aa21.85■■□□□ 1.09
CLK3-223ENST00000568488 CST9Q5W186 159 aa21.85■■□□□ 1.09
CLK3-223ENST00000568488 BTBD11A6QL63 1104 aa21.84■■□□□ 1.09
CLK3-223ENST00000568488 TLL2Q9Y6L7 1015 aa21.84■■□□□ 1.09
CLK3-223ENST00000568488 MAP2K2P36507 400 aa21.83■■□□□ 1.09
CLK3-223ENST00000568488 GAS2L2Q8NHY3 880 aa21.83■■□□□ 1.09
CLK3-223ENST00000568488 U2SURPO15042 1029 aaKnown RBP21.82■■□□□ 1.08
CLK3-223ENST00000568488 USP50Q70EL3 339 aaPredicted RBP21.82■■□□□ 1.08
CLK3-223ENST00000568488 PSMD1Q99460 953 aa21.82■■□□□ 1.08
CLK3-223ENST00000568488 TIMELESSQ9UNS1 1208 aa21.82■■□□□ 1.08
CLK3-223ENST00000568488 PRAMEF22A3QJZ6 481 aa21.81■■□□□ 1.08
CLK3-223ENST00000568488 SCNN1DP51172 638 aa21.81■■□□□ 1.08
CLK3-223ENST00000568488 DGKZQ13574 1117 aa21.81■■□□□ 1.08
CLK3-223ENST00000568488 AMER1Q5JTC6 1135 aaPredicted RBP21.81■■□□□ 1.08
CLK3-223ENST00000568488 LARGE2Q8N3Y3 721 aa21.81■■□□□ 1.08
CLK3-223ENST00000568488 BCORQ6W2J9 1755 aa21.81■■□□□ 1.08
CLK3-223ENST00000568488 CA12O43570 354 aa21.79■■□□□ 1.08
CLK3-223ENST00000568488 THSD7BQ9C0I4 1608 aa21.79■■□□□ 1.08
CLK3-223ENST00000568488 TCERG1O14776 1098 aaKnown RBP21.78■■□□□ 1.08
CLK3-223ENST00000568488 CELF2O95319 508 aaKnown RBP21.78■■□□□ 1.08
CLK3-223ENST00000568488 CC2D2BQ6DHV5 1058 aa21.78■■□□□ 1.08
CLK3-223ENST00000568488 LTBP1Q14766 1721 aa21.77■■□□□ 1.08
CLK3-223ENST00000568488 SNRPA1P09661 255 aaKnown RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms