RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 NBPF5PQ86XG9 351 aaPredicted RBP22.07■■□□□ 1.12
CLK3-210ENST00000563112 NGEFQ8N5V2 710 aa22.07■■□□□ 1.12
CLK3-210ENST00000563112 CCDC24Q8N4L8 307 aa22.06■■□□□ 1.12
CLK3-210ENST00000563112 ZNF622Q969S3 477 aaKnown RBP eCLIP22.06■■□□□ 1.12
CLK3-210ENST00000563112 NIP7Q9Y221 180 aaKnown RBP eCLIP22.06■■□□□ 1.12
CLK3-210ENST00000563112 MYL6BP14649 208 aa22.05■■□□□ 1.12
CLK3-210ENST00000563112 C9orf131Q5VYM1 1079 aa22.05■■□□□ 1.12
CLK3-210ENST00000563112 TPTE2Q6XPS3 522 aa22.05■■□□□ 1.12
CLK3-210ENST00000563112 KIF6Q6ZMV9 814 aa22.05■■□□□ 1.12
CLK3-210ENST00000563112 ERBB4Q15303 1308 aa22.05■■□□□ 1.12
CLK3-210ENST00000563112 DLEC1Q9Y238 1755 aa22.04■■□□□ 1.12
CLK3-210ENST00000563112 ERVV-1B6SEH8 477 aa22.03■■□□□ 1.12
CLK3-210ENST00000563112 ANKRD31Q8N7Z5 1873 aa22.03■■□□□ 1.12
CLK3-210ENST00000563112 EIF2S2P20042 333 aaKnown RBP22.02■■□□□ 1.12
CLK3-210ENST00000563112 HLFQ16534 295 aa22.02■■□□□ 1.12
CLK3-210ENST00000563112 RNF181Q9P0P0 153 aa22.02■■□□□ 1.12
CLK3-210ENST00000563112 TRIM35Q9UPQ4 493 aa22.02■■□□□ 1.12
CLK3-210ENST00000563112 LAS1LQ9Y4W2 734 aaKnown RBP22.02■■□□□ 1.12
CLK3-210ENST00000563112 ZNF316A6NFI3 1004 aaPredicted RBP22.01■■□□□ 1.11
CLK3-210ENST00000563112 GTF2E1P29083 439 aaPredicted RBP22.01■■□□□ 1.11
CLK3-210ENST00000563112 MAP3K15Q6ZN16 1313 aa22.01■■□□□ 1.11
CLK3-210ENST00000563112 FAM177BA6PVY3 158 aa22■■□□□ 1.11
CLK3-210ENST00000563112 CHL1O00533 1208 aa22■■□□□ 1.11
CLK3-210ENST00000563112 STYK1Q6J9G0 422 aa22■■□□□ 1.11
CLK3-210ENST00000563112 TTLL7Q6ZT98 887 aa22■■□□□ 1.11
CLK3-210ENST00000563112 CNKSR1Q969H4 720 aa22■■□□□ 1.11
CLK3-210ENST00000563112 MASTLQ96GX5 879 aa21.99■■□□□ 1.11
CLK3-210ENST00000563112 SRGNP10124 158 aa21.98■■□□□ 1.11
CLK3-210ENST00000563112 NYXQ9GZU5 481 aa21.98■■□□□ 1.11
CLK3-210ENST00000563112 ZBTB3Q9H5J0 574 aa21.98■■□□□ 1.11
CLK3-210ENST00000563112 SENP3-EIF4A1A0A087X0R7 540 aa21.97■■□□□ 1.11
CLK3-210ENST00000563112 RASSF7Q02833 373 aa21.97■■□□□ 1.11
CLK3-210ENST00000563112 APAF1O14727 1248 aa21.96■■□□□ 1.11
CLK3-210ENST00000563112 C21orf2O43822 256 aa21.96■■□□□ 1.11
CLK3-210ENST00000563112 LMNB1P20700 586 aa21.96■■□□□ 1.11
CLK3-210ENST00000563112 ZNF219Q9P2Y4 722 aaPredicted RBP21.96■■□□□ 1.11
CLK3-210ENST00000563112 NUP98P52948 1817 aa21.96■■□□□ 1.11
CLK3-210ENST00000563112 SBF1O95248 1867 aa21.96■■□□□ 1.11
CLK3-210ENST00000563112 COL11A2P13942 1736 aaPredicted RBP21.95■■□□□ 1.1
CLK3-210ENST00000563112 NPR1P16066 1061 aa21.95■■□□□ 1.1
CLK3-210ENST00000563112 CALD1Q05682 793 aaKnown RBP21.95■■□□□ 1.1
CLK3-210ENST00000563112 CFAP44Q96MT7 982 aa21.95■■□□□ 1.1
CLK3-210ENST00000563112 PDIA6Q15084 440 aa21.94■■□□□ 1.1
CLK3-210ENST00000563112 SOGA3Q5TF21 947 aa21.94■■□□□ 1.1
CLK3-210ENST00000563112 GIGYF2Q6Y7W6 1299 aaKnown RBP21.94■■□□□ 1.1
CLK3-210ENST00000563112 NECTIN2Q92692 538 aa21.94■■□□□ 1.1
CLK3-210ENST00000563112 KDM2BQ8NHM5 1336 aa21.94■■□□□ 1.1
CLK3-210ENST00000563112 KLRG2A4D1S0 409 aaPredicted RBP21.93■■□□□ 1.1
CLK3-210ENST00000563112 KIF3CO14782 793 aa21.93■■□□□ 1.1
CLK3-210ENST00000563112 GPTP24298 496 aa21.93■■□□□ 1.1
CLK3-210ENST00000563112 PRPF40BQ6NWY9 871 aaKnown RBP21.93■■□□□ 1.1
CLK3-210ENST00000563112 ZC3H4Q9UPT8 1303 aaKnown RBP21.93■■□□□ 1.1
CLK3-210ENST00000563112 ANP32CO43423 234 aa21.92■■□□□ 1.1
CLK3-210ENST00000563112 ANXA1P04083 346 aa21.92■■□□□ 1.1
CLK3-210ENST00000563112 HOXB7P09629 217 aa21.92■■□□□ 1.1
CLK3-210ENST00000563112 NFKBIEO00221 500 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 KRT24Q2M2I5 525 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 PROSER3Q2NL68 480 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 PARP10Q53GL7 1025 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 LRP10Q7Z4F1 713 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 PPP1R42Q7Z4L9 355 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 ZNF34Q8IZ26 560 aa21.91■■□□□ 1.1
CLK3-210ENST00000563112 DDX21Q9NR30 783 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLK3-210ENST00000563112 ALDH1B1P30837 517 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 GNAI1P63096 354 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 AIMP1Q12904 312 aaKnown RBP21.9■■□□□ 1.1
CLK3-210ENST00000563112 HDGFL1Q5TGJ6 251 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 COPS6Q7L5N1 327 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 NUTM1Q86Y26 1132 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 NMRK2Q9NPI5 230 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 SLX4Q8IY92 1834 aa21.9■■□□□ 1.1
CLK3-210ENST00000563112 IBTKQ9P2D0 1353 aaPredicted RBP21.89■■□□□ 1.1
CLK3-210ENST00000563112 ERFEQ4G0M1 354 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 HSP90AB3PQ58FF7 597 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 SUSD4Q5VX71 490 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 C16orf71Q8IYS4 520 aaPredicted RBP21.89■■□□□ 1.09
CLK3-210ENST00000563112 XAGE3Q8WTP9 111 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 TAOK3Q9H2K8 898 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 MBIPQ9NS73 344 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 IFT57Q9NWB7 429 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 CACNA1SQ13698 1873 aa21.89■■□□□ 1.09
CLK3-210ENST00000563112 CCDC88AQ3V6T2 1871 aa21.88■■□□□ 1.09
CLK3-210ENST00000563112 UBN2Q6ZU65 1347 aa21.88■■□□□ 1.09
CLK3-210ENST00000563112 ARFGEF2Q9Y6D5 1785 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 LTBP3Q9NS15 1303 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 TOMM70O94826 608 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 ZNF853P0CG23 659 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 PRELPP51888 382 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 CCDC184Q52MB2 194 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 CCDC93Q567U6 631 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 DUSP27Q5VZP5 1158 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 CHPF2Q9P2E5 772 aa21.87■■□□□ 1.09
CLK3-210ENST00000563112 DBF4Q9UBU7 674 aaPredicted RBP21.87■■□□□ 1.09
CLK3-210ENST00000563112 FER1L6Q2WGJ9 1857 aa21.86■■□□□ 1.09
CLK3-210ENST00000563112 UTP14AQ9BVJ6 771 aaKnown RBP21.86■■□□□ 1.09
CLK3-210ENST00000563112 MRS2Q9HD23 443 aa21.86■■□□□ 1.09
CLK3-210ENST00000563112 ABCC12Q96J65 1359 aa21.86■■□□□ 1.09
CLK3-210ENST00000563112 NTSR2O95665 410 aa21.85■■□□□ 1.09
CLK3-210ENST00000563112 CRY2Q49AN0 593 aa21.85■■□□□ 1.09
CLK3-210ENST00000563112 C7orf43Q8WVR3 580 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms