RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ARFGEF2Q9Y6D5 1785 aa22.55■■□□□ 1.2
SHMT2-225ENST00000556798 AIMP1Q12904 312 aaKnown RBP22.54■■□□□ 1.2
SHMT2-225ENST00000556798 CCDC30Q5VVM6 783 aa22.54■■□□□ 1.2
SHMT2-225ENST00000556798 KIF6Q6ZMV9 814 aa22.54■■□□□ 1.2
SHMT2-225ENST00000556798 XAGE3Q8WTP9 111 aa22.54■■□□□ 1.2
SHMT2-225ENST00000556798 VAMP4O75379 141 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 DDR1Q08345 913 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 BICDL1Q6ZP65 573 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 COPS6Q7L5N1 327 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 ZBTB3Q9H5J0 574 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 ZBED9Q6R2W3 1325 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 MAP3K15Q6ZN16 1313 aa22.53■■□□□ 1.2
SHMT2-225ENST00000556798 NRXN2Q9P2S2 1712 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 NFIXQ14938 502 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 HLFQ16534 295 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 TBC1D9BQ66K14 1250 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 KLHL34Q8N239 644 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 KIF13BQ9NQT8 1826 aa22.52■■□□□ 1.2
SHMT2-225ENST00000556798 TRMT2AQ8IZ69 625 aaKnown RBP22.51■■□□□ 1.19
SHMT2-225ENST00000556798 HYPKQ9NX55 129 aa22.51■■□□□ 1.19
SHMT2-225ENST00000556798 TM4SF1P30408 202 aa22.5■■□□□ 1.19
SHMT2-225ENST00000556798 STK31Q9BXU1 1019 aa22.5■■□□□ 1.19
SHMT2-225ENST00000556798 PHAXQ9H814 394 aaKnown RBP22.5■■□□□ 1.19
SHMT2-225ENST00000556798 ZNF652Q9Y2D9 606 aa22.5■■□□□ 1.19
SHMT2-225ENST00000556798 PARP3Q9Y6F1 533 aa22.5■■□□□ 1.19
SHMT2-225ENST00000556798 POLRMTO00411 1230 aaKnown RBP22.49■■□□□ 1.19
SHMT2-225ENST00000556798 CHMP4AQ9BY43 222 aa22.49■■□□□ 1.19
SHMT2-225ENST00000556798 ERVV-1B6SEH8 477 aa22.48■■□□□ 1.19
SHMT2-225ENST00000556798 FHDC1Q9C0D6 1143 aaPredicted RBP22.48■■□□□ 1.19
SHMT2-225ENST00000556798 CLEC4GQ6UXB4 293 aa22.47■■□□□ 1.19
SHMT2-225ENST00000556798 KIAA1551Q9HCM1 1747 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 N4BP2Q86UW6 1770 aaPredicted RBP22.46■■□□□ 1.19
SHMT2-225ENST00000556798 ANKRD31Q8N7Z5 1873 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 SLC4A2P04920 1241 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 G2E3Q7L622 706 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 CARMIL3Q8ND23 1372 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 ATP10DQ9P241 1426 aa22.46■■□□□ 1.19
SHMT2-225ENST00000556798 SETDB2Q96T68 719 aa22.45■■□□□ 1.18
SHMT2-225ENST00000556798 NIP7Q9Y221 180 aaKnown RBP eCLIP22.45■■□□□ 1.18
SHMT2-225ENST00000556798 C10orf71Q711Q0 1435 aa22.45■■□□□ 1.18
SHMT2-225ENST00000556798 RGL2O15211 777 aa22.44■■□□□ 1.18
SHMT2-225ENST00000556798 SERPINB2P05120 415 aa22.44■■□□□ 1.18
SHMT2-225ENST00000556798 GPTP24298 496 aa22.44■■□□□ 1.18
SHMT2-225ENST00000556798 GIGYF2Q6Y7W6 1299 aaKnown RBP22.44■■□□□ 1.18
SHMT2-225ENST00000556798 ANKRD13DQ6ZTN6 518 aa22.43■■□□□ 1.18
SHMT2-225ENST00000556798 PLBD2Q8NHP8 589 aa22.43■■□□□ 1.18
SHMT2-225ENST00000556798 UBN2Q6ZU65 1347 aa22.42■■□□□ 1.18
SHMT2-225ENST00000556798 FAM177BA6PVY3 158 aa22.42■■□□□ 1.18
SHMT2-225ENST00000556798 YTHDC1Q96MU7 727 aaKnown RBP22.42■■□□□ 1.18
SHMT2-225ENST00000556798 SYT17Q9BSW7 474 aa22.42■■□□□ 1.18
SHMT2-225ENST00000556798 RIC3Q7Z5B4 369 aa22.41■■□□□ 1.18
SHMT2-225ENST00000556798 CCDC24Q8N4L8 307 aa22.41■■□□□ 1.18
SHMT2-225ENST00000556798 NLGN2Q8NFZ4 835 aa22.41■■□□□ 1.18
SHMT2-225ENST00000556798 FLIIQ13045 1269 aa22.4■■□□□ 1.18
SHMT2-225ENST00000556798 ZNF34Q8IZ26 560 aa22.4■■□□□ 1.18
SHMT2-225ENST00000556798 BCL2L13Q9BXK5 485 aa22.4■■□□□ 1.18
SHMT2-225ENST00000556798 COL11A2P13942 1736 aaPredicted RBP22.4■■□□□ 1.18
SHMT2-225ENST00000556798 ADCY9O60503 1353 aa22.39■■□□□ 1.18
SHMT2-225ENST00000556798 PRR5LQ6MZQ0 368 aa22.39■■□□□ 1.17
SHMT2-225ENST00000556798 NBPF5PQ86XG9 351 aaPredicted RBP22.39■■□□□ 1.17
SHMT2-225ENST00000556798 ZNF428Q96B54 188 aa22.39■■□□□ 1.17
SHMT2-225ENST00000556798 CD2APQ9Y5K6 639 aa22.39■■□□□ 1.17
SHMT2-225ENST00000556798 TNRC6CQ9HCJ0 1690 aaKnown RBP22.39■■□□□ 1.17
SHMT2-225ENST00000556798 BRCA1P38398 1863 aaKnown RBP22.39■■□□□ 1.17
SHMT2-225ENST00000556798 NPHP1O15259 732 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 DDX58O95786 925 aaKnown RBP22.38■■□□□ 1.17
SHMT2-225ENST00000556798 TCIRG1Q13488 830 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 HSP90AB3PQ58FF7 597 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 CNBD1Q8NA66 436 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 SSH1Q8WYL5 1049 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 DLEC1Q9Y238 1755 aa22.38■■□□□ 1.17
SHMT2-225ENST00000556798 PI4KAP2A4QPH2 592 aa22.37■■□□□ 1.17
SHMT2-225ENST00000556798 FKBP5Q13451 457 aaPredicted RBP22.37■■□□□ 1.17
SHMT2-225ENST00000556798 PI4KAP1Q8N8J0 262 aa22.37■■□□□ 1.17
SHMT2-225ENST00000556798 MAP3K2Q9Y2U5 619 aa22.37■■□□□ 1.17
SHMT2-225ENST00000556798 CACNA1SQ13698 1873 aa22.37■■□□□ 1.17
SHMT2-225ENST00000556798 PXDNLA1KZ92 1463 aa22.36■■□□□ 1.17
SHMT2-225ENST00000556798 ATP5J2-PTCD1G3V325 749 aa22.36■■□□□ 1.17
SHMT2-225ENST00000556798 CT47B1P0C2W7 299 aaPredicted RBP22.36■■□□□ 1.17
SHMT2-225ENST00000556798 SUSD4Q5VX71 490 aa22.36■■□□□ 1.17
SHMT2-225ENST00000556798 KSR2Q6VAB6 950 aa22.36■■□□□ 1.17
SHMT2-225ENST00000556798 MRPL50Q8N5N7 158 aaKnown RBP22.36■■□□□ 1.17
SHMT2-225ENST00000556798 MYD88Q99836 296 aa22.35■■□□□ 1.17
SHMT2-225ENST00000556798 SMC4Q9NTJ3 1288 aa22.35■■□□□ 1.17
SHMT2-225ENST00000556798 LAMB2P55268 1798 aa22.35■■□□□ 1.17
SHMT2-225ENST00000556798 ST5P78524 1137 aa22.34■■□□□ 1.17
SHMT2-225ENST00000556798 NLRP10Q86W26 655 aa22.34■■□□□ 1.17
SHMT2-225ENST00000556798 NUTM1Q86Y26 1132 aa22.34■■□□□ 1.17
SHMT2-225ENST00000556798 ISCA1Q9BUE6 129 aa22.34■■□□□ 1.17
SHMT2-225ENST00000556798 ABCC12Q96J65 1359 aa22.34■■□□□ 1.17
SHMT2-225ENST00000556798 IBTKQ9P2D0 1353 aaPredicted RBP22.34■■□□□ 1.17
SHMT2-225ENST00000556798 DDX60Q8IY21 1712 aaKnown RBP22.34■■□□□ 1.17
SHMT2-225ENST00000556798 NTSR2O95665 410 aa22.33■■□□□ 1.17
SHMT2-225ENST00000556798 ALDH1L2Q3SY69 923 aa22.33■■□□□ 1.17
SHMT2-225ENST00000556798 PARP10Q53GL7 1025 aa22.33■■□□□ 1.17
SHMT2-225ENST00000556798 TPTE2Q6XPS3 522 aa22.33■■□□□ 1.17
SHMT2-225ENST00000556798 METTL22Q9BUU2 404 aaPredicted RBP22.33■■□□□ 1.17
SHMT2-225ENST00000556798 WWC3Q9ULE0 1092 aa22.33■■□□□ 1.17
SHMT2-225ENST00000556798 GTF2E1P29083 439 aaPredicted RBP22.32■■□□□ 1.16
SHMT2-225ENST00000556798 ERFEQ4G0M1 354 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms