RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NUCB2P80303 420 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 IL17RAQ96F46 866 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 BICC1Q9H694 974 aaKnown RBP22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 PLEKHG2Q9H7P9 1386 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 TTC41PQ6P2S7 1318 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 CNTROBQ8N137 903 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 XAGE3Q8WTP9 111 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 LARP1Q6PKG0 1096 aaKnown RBP22.55■■□□□ 1.2
PRPF40B-208ENST00000548436 CLASRPQ8N2M8 674 aaKnown RBP22.55■■□□□ 1.2
PRPF40B-208ENST00000548436 ARXQ96QS3 562 aa22.55■■□□□ 1.2
PRPF40B-208ENST00000548436 USP16Q9Y5T5 823 aa22.55■■□□□ 1.2
PRPF40B-208ENST00000548436 COPS6Q7L5N1 327 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 TMX3Q96JJ7 454 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 SGSM2O43147 1006 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 EPB41L2O43491 1005 aaKnown RBP22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 PTMSP20962 102 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 BRINP3Q76B58 766 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 LRP10Q7Z4F1 713 aa22.54■■□□□ 1.2
PRPF40B-208ENST00000548436 NEURL1BA8MQ27 555 aa22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 GLRX3O76003 335 aaKnown RBP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 SKOR2Q2VWA4 1001 aaPredicted RBP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 ERC1Q8IUD2 1116 aa22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 RTN4Q9NQC3 1192 aaKnown RBP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 SNRPA1P09661 255 aaKnown RBP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 XRCC6P12956 609 aaKnown RBP eCLIP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 HSPA4P34932 840 aa22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 TTC5Q8N0Z6 440 aa22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.53■■□□□ 1.2
PRPF40B-208ENST00000548436 AFDNP55196 1824 aaKnown RBP22.52■■□□□ 1.2
PRPF40B-208ENST00000548436 PIP4K2AP48426 406 aaPredicted RBP22.52■■□□□ 1.2
PRPF40B-208ENST00000548436 MCM2P49736 904 aa22.52■■□□□ 1.2
PRPF40B-208ENST00000548436 SASH1O94885 1247 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 METTL22Q9BUU2 404 aaPredicted RBP22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 ZDHHC9Q9Y397 364 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 PARP4Q9UKK3 1724 aaKnown RBP22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 GLI3P10071 1580 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 NEXNQ0ZGT2 675 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 GCKRQ14397 625 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 MYD88Q99836 296 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 ECHDC1Q9NTX5 307 aa22.51■■□□□ 1.19
PRPF40B-208ENST00000548436 RAD50Q92878 1312 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 GOLGA6L22H0YM25 854 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 IFIT2P09913 472 aaKnown RBP22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 FMNL2Q96PY5 1086 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 UPF3BQ9BZI7 483 aaKnown RBP22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 LSG1Q9H089 658 aaKnown RBP22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 ARFGEF2Q9Y6D5 1785 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 CABP4P57796 275 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 CWC27Q6UX04 472 aaKnown RBP22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 ANKRD13DQ6ZTN6 518 aa22.5■■□□□ 1.19
PRPF40B-208ENST00000548436 CUL4AQ13619 759 aa22.49■■□□□ 1.19
PRPF40B-208ENST00000548436 AACSQ86V21 672 aa22.49■■□□□ 1.19
PRPF40B-208ENST00000548436 LAMB4A4D0S4 1761 aa22.49■■□□□ 1.19
PRPF40B-208ENST00000548436 G3BP1Q13283 466 aaKnown RBP eCLIP22.48■■□□□ 1.19
PRPF40B-208ENST00000548436 EPHA10Q5JZY3 1008 aa22.48■■□□□ 1.19
PRPF40B-208ENST00000548436 MCTP1Q6DN14 999 aa22.48■■□□□ 1.19
PRPF40B-208ENST00000548436 NOL8Q76FK4 1167 aaKnown RBP22.48■■□□□ 1.19
PRPF40B-208ENST00000548436 EAF2Q96CJ1 260 aaPredicted RBP22.47■■□□□ 1.19
PRPF40B-208ENST00000548436 GPATCH3Q96I76 525 aa22.47■■□□□ 1.19
PRPF40B-208ENST00000548436 KLHDC4Q8TBB5 520 aa22.46■■□□□ 1.19
PRPF40B-208ENST00000548436 SIL1Q9H173 461 aa22.46■■□□□ 1.19
PRPF40B-208ENST00000548436 SNX14Q9Y5W7 946 aa22.46■■□□□ 1.19
PRPF40B-208ENST00000548436 WDR17Q8IZU2 1322 aa22.46■■□□□ 1.19
PRPF40B-208ENST00000548436 PANK2Q9BZ23 570 aa22.45■■□□□ 1.18
PRPF40B-208ENST00000548436 PRDM11Q9NQV5 511 aa22.45■■□□□ 1.18
PRPF40B-208ENST00000548436 JARID2Q92833 1246 aaPredicted RBP22.45■■□□□ 1.18
PRPF40B-208ENST00000548436 CCDC8Q9H0W5 538 aaPredicted RBP22.45■■□□□ 1.18
PRPF40B-208ENST00000548436 DIAPH3Q9NSV4 1193 aa22.45■■□□□ 1.18
PRPF40B-208ENST00000548436 RASEFQ8IZ41 740 aa22.44■■□□□ 1.18
PRPF40B-208ENST00000548436 MRE11P49959 708 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 KLHL40Q2TBA0 621 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 KIAA1211Q6ZU35 1233 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 TOM1L2Q6ZVM7 507 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 GAS2L3Q86XJ1 694 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 INTS4Q96HW7 963 aaKnown RBP22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 LMBRD1Q9NUN5 540 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 TLR7Q9NYK1 1049 aaKnown RBP22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 DDX49Q9Y6V7 483 aaKnown RBP22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 SOS2Q07890 1332 aaPredicted RBP22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 EVI5LQ96CN4 794 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 GRPEL1Q9HAV7 217 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 ZNF335Q9H4Z2 1342 aaPredicted RBP22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 UBR2Q8IWV8 1755 aa22.43■■□□□ 1.18
PRPF40B-208ENST00000548436 ABCA3Q99758 1704 aa22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 ZCRB1Q8TBF4 217 aaKnown RBP22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 COL5A2P05997 1499 aaPredicted RBP22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 RUFY2Q8WXA3 655 aa22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 ISY1Q9ULR0 285 aaKnown RBP22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 PCDH11XQ9BZA7 1347 aa22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 PCDH11YQ9BZA8 1340 aa22.42■■□□□ 1.18
PRPF40B-208ENST00000548436 PTH1RQ03431 593 aa22.41■■□□□ 1.18
PRPF40B-208ENST00000548436 SLAIN2Q9P270 581 aa22.41■■□□□ 1.18
PRPF40B-208ENST00000548436 SHANK3Q9BYB0 1731 aa22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 ATP5J2-PTCD1G3V325 749 aa22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 PTCD1O75127 700 aaKnown RBP22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 CHAMP1Q96JM3 812 aa22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 TTC14Q96N46 770 aa22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 RFX5P48382 616 aaPredicted RBP22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 UBE3BQ7Z3V4 1068 aa22.4■■□□□ 1.18
PRPF40B-208ENST00000548436 NBPF26B4DH59 902 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms