RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 POGZQ7Z3K3 1410 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 MAP3K19Q56UN5 1328 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 BTBD11A6QL63 1104 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 RUFY3Q7L099 469 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 CUL4AQ13619 759 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 RBM33Q96EV2 1170 aaKnown RBP15.3■□□□□ 0.04
MSH6-210ENST00000540021 CSB-PGBD3P0DP91 1061 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 CCT2P78371 535 aaKnown RBP15.3■□□□□ 0.04
MSH6-210ENST00000540021 PIK3R4Q99570 1358 aa15.3■□□□□ 0.04
MSH6-210ENST00000540021 CPLX1O14810 134 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 DDX58O95786 925 aaKnown RBP15.29■□□□□ 0.04
MSH6-210ENST00000540021 ANKRD1Q15327 319 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 MNS1Q8NEH6 495 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 SHROOM2Q13796 1616 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 MYOM1P52179 1685 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 QRICH2Q9H0J4 1663 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 LIG1P18858 919 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 ZBTB9Q96C00 473 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 RAD50Q92878 1312 aa15.29■□□□□ 0.04
MSH6-210ENST00000540021 BIN1O00499 593 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 LARGE1O95461 756 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 CDC37L1Q7L3B6 337 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 ERC1Q8IUD2 1116 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 USP44Q9H0E7 712 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 LRRC7Q96NW7 1537 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 TNNT3P45378 269 aaPredicted RBP15.28■□□□□ 0.04
MSH6-210ENST00000540021 ADCK5Q3MIX3 580 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 ISM2Q6H9L7 571 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 PTH1RQ03431 593 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 CEP135Q66GS9 1140 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 FAM227BQ96M60 508 aa15.28■□□□□ 0.04
MSH6-210ENST00000540021 TULP4Q9NRJ4 1543 aa15.27■□□□□ 0.04
MSH6-210ENST00000540021 SYTL4Q96C24 671 aaPredicted RBP15.27■□□□□ 0.04
MSH6-210ENST00000540021 NRBP1Q9UHY1 535 aa15.27■□□□□ 0.04
MSH6-210ENST00000540021 MAP3K2Q9Y2U5 619 aa15.27■□□□□ 0.04
MSH6-210ENST00000540021 HIP1O00291 1037 aa15.27■□□□□ 0.04
MSH6-210ENST00000540021 CWF19L2Q2TBE0 894 aaKnown RBP15.27■□□□□ 0.04
MSH6-210ENST00000540021 NMIQ13287 307 aaPredicted RBP15.27■□□□□ 0.03
MSH6-210ENST00000540021 STK38Q15208 465 aa15.27■□□□□ 0.03
MSH6-210ENST00000540021 ERCC4Q92889 916 aaPredicted RBP15.27■□□□□ 0.03
MSH6-210ENST00000540021 LARP1Q6PKG0 1096 aaKnown RBP15.26■□□□□ 0.03
MSH6-210ENST00000540021 PDILTQ8N807 584 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 NAT10Q9H0A0 1025 aaKnown RBP15.26■□□□□ 0.03
MSH6-210ENST00000540021 DDX19AQ9NUU7 478 aaKnown RBP15.26■□□□□ 0.03
MSH6-210ENST00000540021 CFAP45Q9UL16 551 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 CREB3L3Q68CJ9 461 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 OSBPL3Q9H4L5 887 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 EFCAB6Q5THR3 1501 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 SKILP12757 684 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 PSME1Q06323 249 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 ME3Q16798 604 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 SYNE3Q6ZMZ3 975 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 EVI5LQ96CN4 794 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 CBX8Q9HC52 389 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 CHD1O14646 1710 aa15.26■□□□□ 0.03
MSH6-210ENST00000540021 RAB11FIP4Q86YS3 637 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 TOMM22Q9NS69 142 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 MTMR6Q9Y217 621 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 WASHC4Q2M389 1173 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 CEP57L1Q8IYX8 460 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 BRF1Q92994 677 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 TMX1Q9H3N1 280 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 NDUFB9Q9Y6M9 179 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 CFAP74Q9C0B2 1584 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 ZCCHC11Q5TAX3 1644 aaKnown RBP15.25■□□□□ 0.03
MSH6-210ENST00000540021 TTC6Q86TZ1 520 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 IL25Q9H293 177 aa15.25■□□□□ 0.03
MSH6-210ENST00000540021 KLHDC4Q8TBB5 520 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 RGS12O14924 1447 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 EDC4Q6P2E9 1401 aaKnown RBP15.24■□□□□ 0.03
MSH6-210ENST00000540021 A0A087WWV3 80 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 KIF24Q5T7B8 1368 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 TAF7LQ5H9L4 462 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 CCAR1Q8IX12 1150 aaKnown RBP15.24■□□□□ 0.03
MSH6-210ENST00000540021 VPS53Q5VIR6 699 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 FSIP1Q8NA03 581 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 KIF18AQ8NI77 898 aa15.24■□□□□ 0.03
MSH6-210ENST00000540021 ATP2B3Q16720 1220 aa15.23■□□□□ 0.03
MSH6-210ENST00000540021 USP16Q9Y5T5 823 aa15.23■□□□□ 0.03
MSH6-210ENST00000540021 APPP05067 770 aa15.23■□□□□ 0.03
MSH6-210ENST00000540021 GLI2P10070 1586 aa15.23■□□□□ 0.03
MSH6-210ENST00000540021 ATP2B1P20020 1258 aa15.23■□□□□ 0.03
MSH6-210ENST00000540021 PNPLA6Q8IY17 1366 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 JAK2O60674 1132 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 NAA30Q147X3 362 aaPredicted RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 EDC3Q96F86 508 aaKnown RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 MED14O60244 1454 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 VIRMAQ69YN4 1812 aaKnown RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 POLR3GO15318 223 aaPredicted RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 SERPINC1P01008 464 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 PIP4K2AP48426 406 aaPredicted RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 KIAA1524Q8TCG1 905 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 ZNF396Q96N95 335 aaPredicted RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 CCDC171Q6TFL3 1326 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 NPHP3Q7Z494 1330 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 DDX46Q7L014 1031 aaKnown RBP15.22■□□□□ 0.03
MSH6-210ENST00000540021 CHST3Q7LGC8 479 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 TPCN1Q9ULQ1 816 aa15.22■□□□□ 0.03
MSH6-210ENST00000540021 TTLL5Q6EMB2 1281 aa15.21■□□□□ 0.03
MSH6-210ENST00000540021 HYPKQ9NX55 129 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms