RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 EFHC2Q5JST6 749 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 LRRC69Q6ZNQ3 347 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 ZNF280CQ8ND82 737 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 ZNF775Q96BV0 537 aaPredicted RBP8.17□□□□□ -1.1
CD44-215ENST00000525241 HSH2DQ96JZ2 352 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 SUSD3Q96L08 255 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 ZCCHC2Q9C0B9 1178 aaKnown RBP8.17□□□□□ -1.1
CD44-215ENST00000525241 KLK14Q9P0G3 267 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 BCS1LQ9Y276 419 aa8.17□□□□□ -1.1
CD44-215ENST00000525241 CDC14CA4D256 554 aa8.16□□□□□ -1.1
CD44-215ENST00000525241 TNFRSF10BO14763 440 aa8.16□□□□□ -1.1
CD44-215ENST00000525241 VSIG8P0DPA2 414 aa8.16□□□□□ -1.1
CD44-215ENST00000525241 NFX1Q12986 1120 aaKnown RBP8.16□□□□□ -1.1
CD44-215ENST00000525241 DGKZQ13574 1117 aa8.16□□□□□ -1.1
CD44-215ENST00000525241 C11orf91Q3C1V1 193 aa8.16□□□□□ -1.1
CD44-215ENST00000525241 GTF3C2Q8WUA4 911 aaPredicted RBP8.16□□□□□ -1.1
CD44-215ENST00000525241 ERBB4Q15303 1308 aa8.15□□□□□ -1.1
CD44-215ENST00000525241 SAMD5Q5TGI4 173 aa8.15□□□□□ -1.1
CD44-215ENST00000525241 SV2AQ7L0J3 742 aa8.15□□□□□ -1.1
CD44-215ENST00000525241 GPR161Q8N6U8 529 aaKnown RBP8.15□□□□□ -1.1
CD44-215ENST00000525241 GTPBP3Q969Y2 492 aaKnown RBP8.15□□□□□ -1.1
CD44-215ENST00000525241 NDFIP2Q9NV92 336 aa8.15□□□□□ -1.1
CD44-215ENST00000525241 ANKIB1Q9P2G1 1089 aa8.15□□□□□ -1.1
CD44-215ENST00000525241 DNMT3AQ9Y6K1 912 aaPredicted RBP8.15□□□□□ -1.1
CD44-215ENST00000525241 SERPINB4P48594 390 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 HIF1AQ16665 826 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 FAM26DQ5JW98 314 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 LCE2CQ5TA81 110 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 HELQQ8TDG4 1101 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 SLC16A10Q8TF71 515 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 IFT43Q96FT9 208 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 NEUROD4Q9HD90 331 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 DMGDHQ9UI17 866 aaKnown RBP8.14□□□□□ -1.11
CD44-215ENST00000525241 MTMR7Q9Y216 660 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 GNEQ9Y223 722 aaKnown RBP8.14□□□□□ -1.11
CD44-215ENST00000525241 GJA3Q9Y6H8 435 aa8.14□□□□□ -1.11
CD44-215ENST00000525241 TGFBR3LH3BV60 316 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 BNIP3LO60238 219 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 KCNA1Q09470 495 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 IER5Q5VY09 327 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 FIGNL1Q6PIW4 674 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 PCDHGC4Q9Y5F7 938 aa8.13□□□□□ -1.11
CD44-215ENST00000525241 GPR25O00155 361 aa8.12□□□□□ -1.11
CD44-215ENST00000525241 ATXN7O15265 892 aaPredicted RBP8.12□□□□□ -1.11
CD44-215ENST00000525241 BRD2P25440 801 aaKnown RBP8.12□□□□□ -1.11
CD44-215ENST00000525241 MTMR3Q13615 1198 aa8.12□□□□□ -1.11
CD44-215ENST00000525241 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
CD44-215ENST00000525241 STIM2Q9P246 746 aa8.12□□□□□ -1.11
CD44-215ENST00000525241 HCN2Q9UL51 889 aa8.12□□□□□ -1.11
CD44-215ENST00000525241 EFSO43281 561 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 ABL1P00519 1130 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 FAM157BP0CG42 384 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 TNP2Q05952 138 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 TYRO3Q06418 890 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 ZNF211Q13398 564 aaPredicted RBP8.11□□□□□ -1.11
CD44-215ENST00000525241 BTLAQ7Z6A9 289 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 ETFBKMTQ8IXQ9 262 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 IRF7Q92985 503 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 ABHD17AQ96GS6 310 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 CFHR5Q9BXR6 569 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 ANO2Q9NQ90 1003 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 EGFL7Q9UHF1 273 aa8.11□□□□□ -1.11
CD44-215ENST00000525241 WFS1O76024 890 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 MICAL2O94851 1124 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 MAPTP10636 758 aaKnown RBP8.1□□□□□ -1.11
CD44-215ENST00000525241 GAS6Q14393 721 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 LCE2AQ5TA79 106 aaPredicted RBP8.1□□□□□ -1.11
CD44-215ENST00000525241 FOXR1Q6PIV2 292 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 AEBP1Q8IUX7 1158 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 KCTD17Q8N5Z5 321 aa8.1□□□□□ -1.11
CD44-215ENST00000525241 DCDC2BA2VCK2 349 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 KHNYNO15037 678 aaKnown RBP8.09□□□□□ -1.11
CD44-215ENST00000525241 ZBTB39O15060 712 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 ICMTO60725 284 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 NPR3P17342 541 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 FKBP4Q02790 459 aaKnown RBP eCLIP8.09□□□□□ -1.11
CD44-215ENST00000525241 SF3B2Q13435 895 aaKnown RBP8.09□□□□□ -1.11
CD44-215ENST00000525241 TREML4Q6UXN2 200 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 TREML1Q86YW5 311 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 CEP63Q96MT8 703 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 TRERF1Q96PN7 1200 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 ATXN7L1Q9ULK2 861 aaPredicted RBP8.09□□□□□ -1.11
CD44-215ENST00000525241 IVNS1ABPQ9Y6Y0 642 aa8.09□□□□□ -1.11
CD44-215ENST00000525241 OPLAHO14841 1288 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 INPP5BP32019 993 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 IDH3AP50213 366 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 ECM1Q16610 540 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 STRN4Q9NRL3 753 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 PHF24Q9UPV7 400 aa8.08□□□□□ -1.12
CD44-215ENST00000525241 PATL2C9JE40 543 aaKnown RBP8.07□□□□□ -1.12
CD44-215ENST00000525241 MPSTP25325 297 aa8.07□□□□□ -1.12
CD44-215ENST00000525241 GRNP28799 593 aaKnown RBP8.07□□□□□ -1.12
CD44-215ENST00000525241 KCNQ4P56696 695 aa8.07□□□□□ -1.12
CD44-215ENST00000525241 SFSWAPQ12872 951 aaKnown RBP8.07□□□□□ -1.12
CD44-215ENST00000525241 RNFT1Q5M7Z0 435 aa8.07□□□□□ -1.12
CD44-215ENST00000525241 ABTB2Q8N961 1025 aa8.07□□□□□ -1.12
CD44-215ENST00000525241 COL25A1Q9BXS0 654 aaPredicted RBP8.07□□□□□ -1.12
CD44-215ENST00000525241 BRD7Q9NPI1 651 aa8.07□□□□□ -1.12
CD44-215ENST00000525241 SOWAHDA6NJG2 315 aa8.06□□□□□ -1.12
CD44-215ENST00000525241 FGFR3P22607 806 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms