RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 AKAP4Q5JQC9 854 aa13.35□□□□□ -0.27
CLCN3-208ENST00000512813 CNKSR1Q969H4 720 aa13.35□□□□□ -0.27
CLCN3-208ENST00000512813 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
CLCN3-208ENST00000512813 COL15A1P39059 1388 aa13.34□□□□□ -0.27
CLCN3-208ENST00000512813 CELF2O95319 508 aaKnown RBP13.34□□□□□ -0.27
CLCN3-208ENST00000512813 BICDL1Q6ZP65 573 aa13.34□□□□□ -0.27
CLCN3-208ENST00000512813 CEP290O15078 2479 aa13.33□□□□□ -0.28
CLCN3-208ENST00000512813 PTCD1O75127 700 aaKnown RBP13.33□□□□□ -0.28
CLCN3-208ENST00000512813 LMOD1P29536 600 aaPredicted RBP13.33□□□□□ -0.28
CLCN3-208ENST00000512813 FKBP4Q02790 459 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLCN3-208ENST00000512813 PKN2Q16513 984 aaKnown RBP13.33□□□□□ -0.28
CLCN3-208ENST00000512813 CCDC93Q567U6 631 aa13.33□□□□□ -0.28
CLCN3-208ENST00000512813 STYK1Q6J9G0 422 aa13.33□□□□□ -0.28
CLCN3-208ENST00000512813 ANKRD26Q9UPS8 1709 aa13.33□□□□□ -0.28
CLCN3-208ENST00000512813 COL6A3P12111 3177 aa13.32□□□□□ -0.28
CLCN3-208ENST00000512813 USP50Q70EL3 339 aaPredicted RBP13.32□□□□□ -0.28
CLCN3-208ENST00000512813 ZNF277Q9NRM2 450 aaPredicted RBP13.32□□□□□ -0.28
CLCN3-208ENST00000512813 C7orf43Q8WVR3 580 aa13.31□□□□□ -0.28
CLCN3-208ENST00000512813 COLQQ9Y215 455 aaPredicted RBP13.31□□□□□ -0.28
CLCN3-208ENST00000512813 MNX1P50219 401 aaPredicted RBP13.3□□□□□ -0.28
CLCN3-208ENST00000512813 SCNN1DP51172 638 aa13.3□□□□□ -0.28
CLCN3-208ENST00000512813 PRR5LQ6MZQ0 368 aa13.3□□□□□ -0.28
CLCN3-208ENST00000512813 RNF186Q9NXI6 227 aa13.3□□□□□ -0.28
CLCN3-208ENST00000512813 ROCK2O75116 1388 aaKnown RBP13.3□□□□□ -0.28
CLCN3-208ENST00000512813 AKAP11Q9UKA4 1901 aa13.29□□□□□ -0.28
CLCN3-208ENST00000512813 TRPA1O75762 1119 aa13.29□□□□□ -0.28
CLCN3-208ENST00000512813 SRGNP10124 158 aa13.29□□□□□ -0.28
CLCN3-208ENST00000512813 IARSP41252 1262 aaKnown RBP13.29□□□□□ -0.28
CLCN3-208ENST00000512813 EPS15P42566 896 aa13.29□□□□□ -0.28
CLCN3-208ENST00000512813 FAM155AB1AL88 458 aaPredicted RBP13.28□□□□□ -0.28
CLCN3-208ENST00000512813 HSP90AB1P08238 724 aaKnown RBP13.28□□□□□ -0.28
CLCN3-208ENST00000512813 CABP4P57796 275 aa13.28□□□□□ -0.28
CLCN3-208ENST00000512813 MASTLQ96GX5 879 aa13.28□□□□□ -0.28
CLCN3-208ENST00000512813 SCN7AQ01118 1682 aa13.28□□□□□ -0.28
CLCN3-208ENST00000512813 PUS7Q96PZ0 661 aaKnown RBP13.27□□□□□ -0.29
CLCN3-208ENST00000512813 RANBP2P49792 3224 aaKnown RBP13.26□□□□□ -0.29
CLCN3-208ENST00000512813 COL4A5P29400 1685 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 EIF6P56537 245 aaKnown RBP13.26□□□□□ -0.29
CLCN3-208ENST00000512813 HUNKP57058 714 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 RBBP6Q7Z6E9 1792 aaKnown RBP13.26□□□□□ -0.29
CLCN3-208ENST00000512813 DNAJC10Q8IXB1 793 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 CCDC24Q8N4L8 307 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 EYA1Q99502 592 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 GLIS2Q9BZE0 524 aaPredicted RBP13.26□□□□□ -0.29
CLCN3-208ENST00000512813 GJA3Q9Y6H8 435 aa13.26□□□□□ -0.29
CLCN3-208ENST00000512813 KIF23Q02241 960 aaPredicted RBP13.25□□□□□ -0.29
CLCN3-208ENST00000512813 RTKN2Q8IZC4 609 aa13.25□□□□□ -0.29
CLCN3-208ENST00000512813 JDP2Q8WYK2 163 aa13.25□□□□□ -0.29
CLCN3-208ENST00000512813 HTTP42858 3142 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 SNED1Q8TER0 1413 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 FYB1O15117 783 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 CYP19A1P11511 503 aaPredicted RBP13.24□□□□□ -0.29
CLCN3-208ENST00000512813 TBC1D9BQ66K14 1250 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 FBXO46Q6PJ61 603 aaPredicted RBP13.24□□□□□ -0.29
CLCN3-208ENST00000512813 SYNE4Q8N205 404 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 GGNBP2Q9H3C7 697 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 ZNF408Q9H9D4 720 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 ZBTB1Q9Y2K1 713 aa13.24□□□□□ -0.29
CLCN3-208ENST00000512813 RGMBQ6NW40 437 aa13.23□□□□□ -0.29
CLCN3-208ENST00000512813 CNBD1Q8NA66 436 aa13.23□□□□□ -0.29
CLCN3-208ENST00000512813 CCDC102AQ96A19 550 aa13.23□□□□□ -0.29
CLCN3-208ENST00000512813 ADARB2Q9NS39 739 aaKnown RBP13.23□□□□□ -0.29
CLCN3-208ENST00000512813 PGAP2Q9UHJ9 254 aa13.23□□□□□ -0.29
CLCN3-208ENST00000512813 KIF20BQ96Q89 1820 aa13.23□□□□□ -0.29
CLCN3-208ENST00000512813 HDAC9Q9UKV0 1011 aa13.22□□□□□ -0.29
CLCN3-208ENST00000512813 EMILIN1Q9Y6C2 1016 aa13.22□□□□□ -0.29
CLCN3-208ENST00000512813 ST5P78524 1137 aa13.21□□□□□ -0.29
CLCN3-208ENST00000512813 OLFM4Q6UX06 510 aa13.21□□□□□ -0.29
CLCN3-208ENST00000512813 NFATC2IPQ8NCF5 419 aa13.21□□□□□ -0.29
CLCN3-208ENST00000512813 PSMD1Q99460 953 aa13.21□□□□□ -0.29
CLCN3-208ENST00000512813 PAPPA2Q9BXP8 1791 aa13.2□□□□□ -0.3
CLCN3-208ENST00000512813 ZNF296Q8WUU4 475 aaPredicted RBP13.2□□□□□ -0.3
CLCN3-208ENST00000512813 GPRC5DQ9NZD1 345 aa13.2□□□□□ -0.3
CLCN3-208ENST00000512813 KIAA0100Q14667 2235 aaKnown RBP13.19□□□□□ -0.3
CLCN3-208ENST00000512813 POTEFA5A3E0 1075 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 NPR1P16066 1061 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 CDC37L1Q7L3B6 337 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 ZC3H15Q8WU90 426 aaKnown RBP13.19□□□□□ -0.3
CLCN3-208ENST00000512813 OTUD5Q96G74 571 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 CSRNP1Q96S65 589 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 BRCA2P51587 3418 aa13.19□□□□□ -0.3
CLCN3-208ENST00000512813 WASHC2AQ641Q2 1341 aa13.18□□□□□ -0.3
CLCN3-208ENST00000512813 A0A087WZG4 1122 aa13.18□□□□□ -0.3
CLCN3-208ENST00000512813 REM2Q8IYK8 340 aaPredicted RBP13.18□□□□□ -0.3
CLCN3-208ENST00000512813 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
CLCN3-208ENST00000512813 NPHP1O15259 732 aa13.17□□□□□ -0.3
CLCN3-208ENST00000512813 SLC10A3P09131 477 aa13.17□□□□□ -0.3
CLCN3-208ENST00000512813 MTHFSP49914 203 aa13.17□□□□□ -0.3
CLCN3-208ENST00000512813 EIF5P55010 431 aaKnown RBP13.17□□□□□ -0.3
CLCN3-208ENST00000512813 INTS3Q68E01 1043 aaKnown RBP13.17□□□□□ -0.3
CLCN3-208ENST00000512813 ZNF530Q6P9A1 599 aaPredicted RBP13.17□□□□□ -0.3
CLCN3-208ENST00000512813 UNC80Q8N2C7 3258 aa13.16□□□□□ -0.3
CLCN3-208ENST00000512813 KLRG2A4D1S0 409 aaPredicted RBP13.16□□□□□ -0.3
CLCN3-208ENST00000512813 ZNF157P51786 506 aaPredicted RBP13.16□□□□□ -0.3
CLCN3-208ENST00000512813 NOM1Q5C9Z4 860 aaKnown RBP13.16□□□□□ -0.3
CLCN3-208ENST00000512813 L3MBTL2Q969R5 705 aa13.16□□□□□ -0.3
CLCN3-208ENST00000512813 GBA2Q9HCG7 927 aaPredicted RBP13.16□□□□□ -0.3
CLCN3-208ENST00000512813 PLEKHO1Q53GL0 409 aaPredicted RBP13.15□□□□□ -0.3
CLCN3-208ENST00000512813 SETDB2Q96T68 719 aa13.15□□□□□ -0.3
CLCN3-208ENST00000512813 CENPFP49454 3210 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms