RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 NEURL1BA8MQ27 555 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 C21orf2O43822 256 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 ADH6P28332 368 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 KANK4Q5T7N3 995 aaPredicted RBP11.15□□□□□ -0.62
NUP54-209ENST00000510569 ZNF468Q5VIY5 522 aaPredicted RBP11.15□□□□□ -0.62
NUP54-209ENST00000510569 LRRC69Q6ZNQ3 347 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 STAG2Q8N3U4 1231 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 DCAF5Q96JK2 942 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 MARK1Q9P0L2 795 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 KLF15Q9UIH9 416 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 MKL2Q9ULH7 1088 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 CHMP3Q9Y3E7 222 aa11.15□□□□□ -0.62
NUP54-209ENST00000510569 SEC13P55735 322 aa11.14□□□□□ -0.63
NUP54-209ENST00000510569 RHPN1Q8TCX5 695 aa11.14□□□□□ -0.63
NUP54-209ENST00000510569 IGHA1P01876 353 aa11.13□□□□□ -0.63
NUP54-209ENST00000510569 PTK7Q13308 1070 aa11.13□□□□□ -0.63
NUP54-209ENST00000510569 CRTC2Q53ET0 693 aaPredicted RBP11.13□□□□□ -0.63
NUP54-209ENST00000510569 FCHSD1Q86WN1 690 aa11.13□□□□□ -0.63
NUP54-209ENST00000510569 FAM196BA6NMK8 535 aa11.12□□□□□ -0.63
NUP54-209ENST00000510569 PPP1R12BO60237 982 aaPredicted RBP11.12□□□□□ -0.63
NUP54-209ENST00000510569 LARP1Q6PKG0 1096 aaKnown RBP11.12□□□□□ -0.63
NUP54-209ENST00000510569 GAS2L2Q8NHY3 880 aa11.12□□□□□ -0.63
NUP54-209ENST00000510569 BTBD6Q96KE9 485 aa11.12□□□□□ -0.63
NUP54-209ENST00000510569 PHACTR1Q9C0D0 580 aa11.12□□□□□ -0.63
NUP54-209ENST00000510569 USP17L15C9J2P7 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L10C9JJH3 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L13C9JLJ4 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L12C9JPN9 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L11C9JVI0 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L21D6R901 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L18D6R9N7 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L22D6RA61 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L17D6RBQ6 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L19D6RCP7 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L20D6RJB6 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 AMPD1P23109 780 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 DGKGP49619 791 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 USP17L24Q0WX57 530 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 RRAGCQ9HB90 399 aa11.11□□□□□ -0.63
NUP54-209ENST00000510569 GPAT2Q6NUI2 795 aa11.1□□□□□ -0.63
NUP54-209ENST00000510569 LINC00114Q6XXX2 140 aa11.1□□□□□ -0.63
NUP54-209ENST00000510569 C2orf49Q9BVC5 232 aaPredicted RBP11.1□□□□□ -0.63
NUP54-209ENST00000510569 HCN4Q9Y3Q4 1203 aa11.1□□□□□ -0.63
NUP54-209ENST00000510569 ATAD2Q6PL18 1390 aa11.1□□□□□ -0.63
NUP54-209ENST00000510569 DPYDQ12882 1025 aa11.09□□□□□ -0.63
NUP54-209ENST00000510569 ALYREFQ86V81 257 aaKnown RBP11.09□□□□□ -0.63
NUP54-209ENST00000510569 MDFIQ99750 246 aa11.09□□□□□ -0.63
NUP54-209ENST00000510569 NEUROD4Q9HD90 331 aa11.09□□□□□ -0.63
NUP54-209ENST00000510569 PRR12Q9ULL5 1215 aa11.09□□□□□ -0.63
NUP54-209ENST00000510569 ITGB2P05107 769 aa11.08□□□□□ -0.64
NUP54-209ENST00000510569 LMOD1P29536 600 aaPredicted RBP11.08□□□□□ -0.64
NUP54-209ENST00000510569 PLA2G4EQ3MJ16 856 aa11.08□□□□□ -0.64
NUP54-209ENST00000510569 SCG3Q8WXD2 468 aaKnown RBP11.08□□□□□ -0.64
NUP54-209ENST00000510569 HSH2DQ96JZ2 352 aa11.08□□□□□ -0.64
NUP54-209ENST00000510569 ANKIB1Q9P2G1 1089 aa11.08□□□□□ -0.64
NUP54-209ENST00000510569 PCBP4P57723 403 aaKnown RBP11.07□□□□□ -0.64
NUP54-209ENST00000510569 CFAP70Q5T0N1 1121 aa11.07□□□□□ -0.64
NUP54-209ENST00000510569 CHSY3Q70JA7 882 aa11.07□□□□□ -0.64
NUP54-209ENST00000510569 ANKMY2Q8IV38 441 aa11.07□□□□□ -0.64
NUP54-209ENST00000510569 ALDH16A1Q8IZ83 802 aa11.07□□□□□ -0.64
NUP54-209ENST00000510569 VRTNQ9H8Y1 702 aa11.07□□□□□ -0.64
NUP54-209ENST00000510569 PIK3R2O00459 728 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 GNB5O14775 395 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 COL8A1P27658 744 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 KCNQ4P56696 695 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 TYRO3Q06418 890 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 SFSWAPQ12872 951 aaKnown RBP11.06□□□□□ -0.64
NUP54-209ENST00000510569 SUSD3Q96L08 255 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 ARXQ96QS3 562 aa11.06□□□□□ -0.64
NUP54-209ENST00000510569 IGFBP4P22692 258 aa11.05□□□□□ -0.64
NUP54-209ENST00000510569 GRIN2CQ14957 1233 aa11.05□□□□□ -0.64
NUP54-209ENST00000510569 SYT9Q86SS6 491 aa11.05□□□□□ -0.64
NUP54-209ENST00000510569 ZNF280CQ8ND82 737 aa11.05□□□□□ -0.64
NUP54-209ENST00000510569 SIN3BO75182 1162 aa11.04□□□□□ -0.64
NUP54-209ENST00000510569 BRD7Q9NPI1 651 aa11.04□□□□□ -0.64
NUP54-209ENST00000510569 ZNF777Q9ULD5 760 aaPredicted RBP11.04□□□□□ -0.64
NUP54-209ENST00000510569 ELOA3CA0A087WX78 387 aaPredicted RBP11.03□□□□□ -0.64
NUP54-209ENST00000510569 ELOA3DA6NLF2 546 aaPredicted RBP11.03□□□□□ -0.64
NUP54-209ENST00000510569 HIF1AQ16665 826 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 ELOA3BQ3SY89 546 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 ELOA3Q8NG57 546 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 CEP63Q96MT8 703 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 SLC30A3Q99726 388 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 HINFPQ9BQA5 517 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 SUV39H2Q9H5I1 410 aa11.03□□□□□ -0.64
NUP54-209ENST00000510569 SPEM2Q0P670 501 aa11.02□□□□□ -0.65
NUP54-209ENST00000510569 RTN1Q16799 776 aa11.02□□□□□ -0.65
NUP54-209ENST00000510569 KRBA1A5PL33 1030 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 ADARB2-AS1A8MUL3 147 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 PROCP04070 461 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 IER5Q5VY09 327 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 CHMP7Q8WUX9 453 aaPredicted RBP11.01□□□□□ -0.65
NUP54-209ENST00000510569 TNFRSF25Q93038 417 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 SPOCK3Q9BQ16 436 aa11.01□□□□□ -0.65
NUP54-209ENST00000510569 MSTNO14793 375 aa11□□□□□ -0.65
NUP54-209ENST00000510569 NOP53Q9NZM5 478 aaKnown RBP11□□□□□ -0.65
NUP54-209ENST00000510569 KCNH4Q9UQ05 1017 aa11□□□□□ -0.65
NUP54-209ENST00000510569 BTLAQ7Z6A9 289 aa10.99□□□□□ -0.65
NUP54-209ENST00000510569 NGLY1Q96IV0 654 aa10.99□□□□□ -0.65
NUP54-209ENST00000510569 WEE1P30291 646 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms