RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PRDM2Q13029 1718 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 A0A1B0GUL7 405 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 GPS2Q13227 327 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 PPP1R13BQ96KQ4 1090 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 JAKMIP1Q96N16 626 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 ORC3Q9UBD5 711 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 POLA1P09884 1462 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 CTTNBP2Q8WZ74 1663 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 ABCC2Q92887 1545 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 CLGNO14967 610 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 PRPF40BQ6NWY9 871 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 FBXO18Q8NFZ0 1043 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 SIL1Q9H173 461 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 FAN1Q9Y2M0 1017 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 GAPVD1Q14C86 1478 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 NESP48681 1621 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 MMP14P50281 582 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 SYCP1Q15431 976 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 G2E3Q7L622 706 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 CCDC102AQ96A19 550 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 UTP14AQ9BVJ6 771 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 CEP83Q9Y592 693 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 SNX14Q9Y5W7 946 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 NOS1P29475 1434 aa8.51□□□□□ -1.05
LIMCH1-207ENST00000508466 PNMA6EA0A0J9YXQ4 647 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 CCDC172P0C7W6 258 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 MCM2P49736 904 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 LEKR1Q6ZMV7 388 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 GOLGA6L1Q8N7Z2 621 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 PGBD1Q96JS3 809 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 PARD6BQ9BYG5 372 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 LRRC2Q9BYS8 371 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 EHD4Q9H223 541 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 DNMT1P26358 1616 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 GPATCH8Q9UKJ3 1502 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 ZRANB2O95218 330 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 NBPF7P0C2Y1 421 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 ATP2B1P20020 1258 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 KARSQ15046 597 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 ME3Q16798 604 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 LARP1Q6PKG0 1096 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 BICC1Q9H694 974 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 RAI14Q9P0K7 980 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 IFNKQ9P0W0 207 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 TAF6LQ9Y6J9 622 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 KIF3BO15066 747 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 VGFO15240 615 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 SLC4A2P04920 1241 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 ANKRD44Q8N8A2 993 aa8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 RIN2Q8WYP3 895 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 INTS4Q96HW7 963 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-207ENST00000508466 CUL7Q14999 1698 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ABCA10Q8WWZ4 1543 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 A0A0U1RQJ8 604 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 DIAPH1O60610 1272 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 JAK2O60674 1132 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 RHOXF2BP0C7M4 288 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 LMOD1P29536 600 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 TDO2P48775 406 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 CCDC30Q5VVM6 783 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ARMCX5Q6P1M9 558 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 CC2D1AQ6P1N0 951 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 MCM10Q7L590 875 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ATRIPQ8WXE1 791 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 RHOXF2Q9BQY4 288 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 JPH2Q9BR39 696 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 CWC15Q9P013 229 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 LIMCH1Q9UPQ0 1083 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 GRIN2AQ12879 1464 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ARHGEF12Q9NZN5 1544 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ARHGAP31Q2M1Z3 1444 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 TRPM1Q7Z4N2 1603 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 SKAP2O75563 359 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ACTN2P35609 894 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 PTH1RQ03431 593 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 PDILTQ8N807 584 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 AK7Q96M32 723 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 DESI2Q9BSY9 194 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 ARGLU1Q9NWB6 273 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 DNAJC5BQ9UF47 199 aa8.49□□□□□ -1.05
LIMCH1-207ENST00000508466 A1BGP04217 495 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 HSP90B1P14625 803 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 KRT85P78386 507 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 ST3GAL1Q11201 340 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 CLIC6Q96NY7 704 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 WDR24Q96S15 920 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 XPO4Q9C0E2 1151 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 CCDC9Q9Y3X0 531 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 SAMD9Q5K651 1589 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 SRCAPQ6ZRS2 3230 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 ATP1A3P13637 1013 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 MAP2K2P36507 400 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 RNF217Q8TC41 542 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 KAT2BQ92831 832 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 ZRANB1Q9UGI0 708 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 CCDC171Q6TFL3 1326 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 GNG11P61952 73 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 GOLGA5Q8TBA6 731 aa8.48□□□□□ -1.05
LIMCH1-207ENST00000508466 DNAAF4Q8WXU2 420 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms