RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 IQSEC3Q9UPP2 1182 aaPredicted RBP16.78■□□□□ 0.28
TCOF1-207ENST00000504761 CEP152O94986 1710 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 PLEKHM2Q8IWE5 1019 aa16.77■□□□□ 0.28
TCOF1-207ENST00000504761 NUP133Q8WUM0 1156 aa16.77■□□□□ 0.28
TCOF1-207ENST00000504761 BICC1Q9H694 974 aaKnown RBP16.77■□□□□ 0.28
TCOF1-207ENST00000504761 ARHGEF10O15013 1369 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 GOLGA6L19H0YKK7 550 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 PPFIA3O75145 1194 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 TRMT2AQ8IZ69 625 aaKnown RBP16.77■□□□□ 0.27
TCOF1-207ENST00000504761 EVI5LQ96CN4 794 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 ANKIB1Q9P2G1 1089 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 AATKQ6ZMQ8 1374 aa16.77■□□□□ 0.27
TCOF1-207ENST00000504761 PNMA6EA0A0J9YXQ4 647 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 TPM4P67936 248 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 ATP7BP35670 1465 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 PRIM1P49642 420 aaKnown RBP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 DZIP3Q86Y13 1208 aaKnown RBP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 FAM89AQ96GI7 184 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 CWC22Q9HCG8 908 aaKnown RBP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 USP16Q9Y5T5 823 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 MCM4P33991 863 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 HELBQ8NG08 1087 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 ZNF219Q9P2Y4 722 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 TCEANC2Q96MN5 208 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 NIP7Q9Y221 180 aaKnown RBP eCLIP16.76■□□□□ 0.27
TCOF1-207ENST00000504761 RIMBP3CA6NJZ7 1639 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 RIMBP3BA6NNM3 1639 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 RIMBP3Q9UFD9 1639 aa16.76■□□□□ 0.27
TCOF1-207ENST00000504761 PES1O00541 588 aaKnown RBP16.75■□□□□ 0.27
TCOF1-207ENST00000504761 ANKRD1Q15327 319 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 CCDC73Q6ZRK6 1079 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 AK7Q96M32 723 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 MINDY4BA8MYZ0 360 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 ATP2B2Q01814 1243 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 DNAJC5Q9H3Z4 198 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 CTNNA3Q9UI47 895 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 KIAA0232Q92628 1395 aa16.75■□□□□ 0.27
TCOF1-207ENST00000504761 HAND2P61296 217 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 DNAJC10Q8IXB1 793 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 KDM2BQ8NHM5 1336 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 CAVIN4Q5BKX8 364 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 RFC4P35249 363 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 IMMTQ16891 758 aaKnown RBP16.74■□□□□ 0.27
TCOF1-207ENST00000504761 FAM98CQ17RN3 349 aaKnown RBP16.74■□□□□ 0.27
TCOF1-207ENST00000504761 SDF4Q9BRK5 362 aa16.74■□□□□ 0.27
TCOF1-207ENST00000504761 ALKQ9UM73 1620 aa16.73■□□□□ 0.27
TCOF1-207ENST00000504761 KRT32Q14532 448 aa16.73■□□□□ 0.27
TCOF1-207ENST00000504761 PIBF1Q8WXW3 757 aa16.73■□□□□ 0.27
TCOF1-207ENST00000504761 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
TCOF1-207ENST00000504761 DIP2CQ9Y2E4 1556 aa16.73■□□□□ 0.27
TCOF1-207ENST00000504761 GIGYF1O75420 1035 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-207ENST00000504761 NBPF5PQ86XG9 351 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-207ENST00000504761 SOS1Q07889 1333 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-207ENST00000504761 WDR33Q9C0J8 1336 aaKnown RBP16.73■□□□□ 0.27
TCOF1-207ENST00000504761 SLC5A1P13866 664 aa16.72■□□□□ 0.27
TCOF1-207ENST00000504761 PHKG2P15735 406 aa16.72■□□□□ 0.27
TCOF1-207ENST00000504761 RBM5P52756 815 aaKnown RBP eCLIP16.72■□□□□ 0.27
TCOF1-207ENST00000504761 U3KPZ7 1027 aaPredicted RBP16.72■□□□□ 0.27
TCOF1-207ENST00000504761 PPRC1Q5VV67 1664 aaKnown RBP16.72■□□□□ 0.27
TCOF1-207ENST00000504761 CCDC82Q8N4S0 544 aa16.72■□□□□ 0.27
TCOF1-207ENST00000504761 MADDQ8WXG6 1647 aa16.72■□□□□ 0.27
TCOF1-207ENST00000504761 IKQ13123 557 aaPredicted RBP16.71■□□□□ 0.27
TCOF1-207ENST00000504761 ADGRB3O60242 1522 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 GLI2P10070 1586 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 SSFA2P28290 1259 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 BABAM1Q9NWV8 329 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 PRAMEF22A3QJZ6 481 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 TFCP2Q12800 502 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 MAP3K12Q12852 859 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 NAPBQ9H115 298 aa16.71■□□□□ 0.27
TCOF1-207ENST00000504761 SLC3A2P08195 630 aaKnown RBP16.7■□□□□ 0.26
TCOF1-207ENST00000504761 ESYT1Q9BSJ8 1104 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 CCDC69A6NI79 296 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 TIMM10P62072 90 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 ATP2B3Q16720 1220 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 NCBP3Q53F19 620 aaKnown RBP16.7■□□□□ 0.26
TCOF1-207ENST00000504761 SASS6Q6UVJ0 657 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 INO80Q9ULG1 1556 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-207ENST00000504761 TPD52L1Q16890 204 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-207ENST00000504761 UBAC1Q9BSL1 405 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 HOXB7P09629 217 aa16.7■□□□□ 0.26
TCOF1-207ENST00000504761 KIDINS220Q9ULH0 1771 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 IRS4O14654 1257 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 CDC5LQ99459 802 aaKnown RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 METTL22Q9BUU2 404 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 ABCA6Q8N139 1617 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 RAB11FIP4Q86YS3 637 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 USP44Q9H0E7 712 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 CIZ1Q9ULV3 898 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 PROSER3Q2NL68 480 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 RPGRQ92834 1020 aaKnown RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 SUCLG2Q96I99 432 aa16.69■□□□□ 0.26
TCOF1-207ENST00000504761 BCL11BQ9C0K0 894 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-207ENST00000504761 C6orf229H3BNL8 230 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 STK38Q15208 465 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 ZNF594Q96JF6 807 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-207ENST00000504761 LRRC2Q9BYS8 371 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 IL15P40933 162 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-207ENST00000504761 CCT2P78371 535 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms