RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 DDB1Q16531 1140 aa22.87■■□□□ 1.25
TSPAN4-212ENST00000494815 PLBD2Q8NHP8 589 aa22.87■■□□□ 1.25
TSPAN4-212ENST00000494815 PKNOX2Q96KN3 472 aa22.87■■□□□ 1.25
TSPAN4-212ENST00000494815 LRRCC1Q9C099 1032 aa22.87■■□□□ 1.25
TSPAN4-212ENST00000494815 NEURL1BA8MQ27 555 aa22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 PIP4K2AP48426 406 aaPredicted RBP22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 ATG3Q9NT62 314 aa22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 APBB1O00213 710 aa22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 SRGAP3O43295 1099 aa22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 SMARCA5O60264 1052 aaPredicted RBP22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 ASAP1Q9ULH1 1129 aa22.86■■□□□ 1.25
TSPAN4-212ENST00000494815 EIF5BO60841 1220 aaKnown RBP22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 RAB11FIP3O75154 756 aa22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 UNC5CLQ8IV45 518 aa22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 C16orf71Q8IYS4 520 aaPredicted RBP22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 MYD88Q99836 296 aa22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 GCKRQ14397 625 aa22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 BECN1Q14457 450 aa22.84■■□□□ 1.25
TSPAN4-212ENST00000494815 TTC22Q5TAA0 569 aa22.83■■□□□ 1.25
TSPAN4-212ENST00000494815 ARFGEF2Q9Y6D5 1785 aa22.83■■□□□ 1.25
TSPAN4-212ENST00000494815 A1BGP04217 495 aa22.83■■□□□ 1.24
TSPAN4-212ENST00000494815 OSBPL3Q9H4L5 887 aa22.83■■□□□ 1.24
TSPAN4-212ENST00000494815 SPATA31A6Q5VVP1 1343 aa22.82■■□□□ 1.24
TSPAN4-212ENST00000494815 HSP90AB4PQ58FF6 505 aa22.82■■□□□ 1.24
TSPAN4-212ENST00000494815 CERKQ8TCT0 537 aa22.82■■□□□ 1.24
TSPAN4-212ENST00000494815 CCDC9Q9Y3X0 531 aaKnown RBP22.82■■□□□ 1.24
TSPAN4-212ENST00000494815 OTUD7AQ8TE49 926 aaPredicted RBP22.82■■□□□ 1.24
TSPAN4-212ENST00000494815 GSPT1P15170 499 aaKnown RBP22.81■■□□□ 1.24
TSPAN4-212ENST00000494815 SURF6O75683 361 aaKnown RBP22.8■■□□□ 1.24
TSPAN4-212ENST00000494815 STARD3NLO95772 234 aa22.8■■□□□ 1.24
TSPAN4-212ENST00000494815 TBC1D32Q96NH3 1257 aa22.8■■□□□ 1.24
TSPAN4-212ENST00000494815 NGLY1Q96IV0 654 aa22.8■■□□□ 1.24
TSPAN4-212ENST00000494815 BCL9LQ86UU0 1499 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 COL15A1P39059 1388 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 VPS72Q15906 364 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 SUCLG2Q96I99 432 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 DOT1LQ8TEK3 1739 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 SALL3Q9BXA9 1300 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 PRIM1P49642 420 aaKnown RBP22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 FNBP4Q8N3X1 1017 aaPredicted RBP22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 KAZALD1Q96I82 304 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 C8orf37Q96NL8 207 aa22.79■■□□□ 1.24
TSPAN4-212ENST00000494815 PDE1AP54750 535 aa22.78■■□□□ 1.24
TSPAN4-212ENST00000494815 DNAJC10Q8IXB1 793 aa22.78■■□□□ 1.24
TSPAN4-212ENST00000494815 SYTL4Q96C24 671 aaPredicted RBP22.78■■□□□ 1.24
TSPAN4-212ENST00000494815 KIF1BPQ96EK5 621 aa22.78■■□□□ 1.24
TSPAN4-212ENST00000494815 RBM42Q9BTD8 480 aaKnown RBP22.78■■□□□ 1.24
TSPAN4-212ENST00000494815 CDC45O75419 566 aa22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 TTLL7Q6ZT98 887 aa22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 NUP188Q5SRE5 1749 aa22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 FAM43AQ8N2R8 423 aa22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 MARCH10Q8NA82 808 aaPredicted RBP22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 BICC1Q9H694 974 aaKnown RBP22.77■■□□□ 1.24
TSPAN4-212ENST00000494815 RHPN1Q8TCX5 695 aa22.76■■□□□ 1.23
TSPAN4-212ENST00000494815 MX1P20591 662 aa22.75■■□□□ 1.23
TSPAN4-212ENST00000494815 MFAP1P55081 439 aaKnown RBP22.75■■□□□ 1.23
TSPAN4-212ENST00000494815 TBC1D9Q6ZT07 1266 aa22.75■■□□□ 1.23
TSPAN4-212ENST00000494815 STAP2Q9UGK3 403 aa22.75■■□□□ 1.23
TSPAN4-212ENST00000494815 AFDNP55196 1824 aaKnown RBP22.75■■□□□ 1.23
TSPAN4-212ENST00000494815 KAT6BQ8WYB5 2073 aa22.74■■□□□ 1.23
TSPAN4-212ENST00000494815 AOX1Q06278 1338 aa22.74■■□□□ 1.23
TSPAN4-212ENST00000494815 ATP5J2-PTCD1G3V325 749 aa22.73■■□□□ 1.23
TSPAN4-212ENST00000494815 ERC1Q8IUD2 1116 aa22.73■■□□□ 1.23
TSPAN4-212ENST00000494815 SLC4A9Q96Q91 983 aa22.73■■□□□ 1.23
TSPAN4-212ENST00000494815 A0A087WZG4 1122 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 CYP19A1P11511 503 aaPredicted RBP22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 SDSP20132 328 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 C22orf23Q9BZE7 217 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 CCDC191Q8NCU4 936 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 ZBTB3Q9H5J0 574 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 ANTXR1Q9H6X2 564 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 IL1RAPL2Q9NP60 686 aa22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 CWC25Q9NXE8 425 aaPredicted RBP22.72■■□□□ 1.23
TSPAN4-212ENST00000494815 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.71■■□□□ 1.23
TSPAN4-212ENST00000494815 CASP7P55210 303 aa22.71■■□□□ 1.23
TSPAN4-212ENST00000494815 OS9Q13438 667 aaPredicted RBP22.71■■□□□ 1.23
TSPAN4-212ENST00000494815 FAM98CQ17RN3 349 aaKnown RBP22.71■■□□□ 1.23
TSPAN4-212ENST00000494815 UBE3BQ7Z3V4 1068 aa22.71■■□□□ 1.23
TSPAN4-212ENST00000494815 RABL6Q3YEC7 729 aaPredicted RBP22.7■■□□□ 1.23
TSPAN4-212ENST00000494815 SLKQ9H2G2 1235 aaPredicted RBP22.7■■□□□ 1.23
TSPAN4-212ENST00000494815 H7C1W4 665 aa22.7■■□□□ 1.22
TSPAN4-212ENST00000494815 KIF6Q6ZMV9 814 aa22.7■■□□□ 1.22
TSPAN4-212ENST00000494815 TJP1Q07157 1748 aa22.69■■□□□ 1.22
TSPAN4-212ENST00000494815 EPHA10Q5JZY3 1008 aa22.69■■□□□ 1.22
TSPAN4-212ENST00000494815 CASC1Q6TDU7 716 aa22.69■■□□□ 1.22
TSPAN4-212ENST00000494815 USP21Q9UK80 565 aa22.69■■□□□ 1.22
TSPAN4-212ENST00000494815 TRIM28Q13263 835 aaKnown RBP22.68■■□□□ 1.22
TSPAN4-212ENST00000494815 RBM25P49756 843 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 TCIRG1Q13488 830 aa22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 ACSBG1Q96GR2 724 aa22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 ISCA1Q9BUE6 129 aa22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 PA2G4Q9UQ80 394 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 CLASRPQ8N2M8 674 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 MAP3K15Q6ZN16 1313 aa22.67■■□□□ 1.22
TSPAN4-212ENST00000494815 G3BP1Q13283 466 aaKnown RBP eCLIP22.66■■□□□ 1.22
TSPAN4-212ENST00000494815 L1TD1Q5T7N2 865 aaKnown RBP22.66■■□□□ 1.22
TSPAN4-212ENST00000494815 ZNF330Q9Y3S2 320 aaPredicted RBP22.66■■□□□ 1.22
TSPAN4-212ENST00000494815 CICQ96RK0 1608 aaPredicted RBP22.66■■□□□ 1.22
TSPAN4-212ENST00000494815 USP42Q9H9J4 1324 aaKnown RBP22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 IL6STP40189 918 aaPredicted RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms