RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	TGFB2	P61812	414 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	DZIP3	Q86Y13	1208 aa	Known RBP	6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	PLBD2	Q8NHP8	589 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	ARX	Q96QS3	562 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	NYX	Q9GZU5	481 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	BCL2L12	Q9HB09	334 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	PTPRC	P08575	1304 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	PSD	A5PKW4	1024 aa	Predicted RBP	6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	POLRMT	O00411	1230 aa	Known RBP	6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	A1BG	P04217	495 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	KCNQ4	P56696	695 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	KIF6	Q6ZMV9	814 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	ZNF34	Q8IZ26	560 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	C8orf58	Q8NAV2	365 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	STK31	Q9BXU1	1019 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	MIS18A	Q9NYP9	233 aa		6.54	□□□□□ -1.36
HDAC6-223	ENST00000480525	DDX60	Q8IY21	1712 aa	Known RBP	6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	DICER1	Q9UPY3	1922 aa	Known RBP	6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	PRAMEF22	A3QJZ6	481 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	MMP10	P09238	476 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	CANX	P27824	592 aa	Known RBP	6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	TCIRG1	Q13488	830 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	NFIX	Q14938	502 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	GRIPAP1	Q4V328	841 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	USPL1	Q5W0Q7	1092 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	ANKRD13D	Q6ZTN6	518 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	ARHGAP45	Q92619	1136 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	SETDB2	Q96T68	719 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	BRIP1	Q9BX63	1249 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	PDGFD	Q9GZP0	370 aa	Predicted RBP	6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	CHPF2	Q9P2E5	772 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	PARP3	Q9Y6F1	533 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	FER1L6	Q2WGJ9	1857 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	LRRC37A	A6NMS7	1700 aa		6.53	□□□□□ -1.36
HDAC6-223	ENST00000480525	KIF16B	Q96L93	1317 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	PHF14	O94880	888 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	ZBTB7A	O95365	584 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	FKBP8	Q14318	412 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	CRY2	Q49AN0	593 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	SLC10A5	Q5PT55	438 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	KSR2	Q6VAB6	950 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	TPTE2	Q6XPS3	522 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	PPP1R42	Q7Z4L9	355 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	CCDC191	Q8NCU4	936 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	TSR2	Q969E8	191 aa	Known RBP	6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	SYT17	Q9BSW7	474 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	ISCA1	Q9BUE6	129 aa		6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	SPINK5	Q9NQ38	1064 aa	Predicted RBP	6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	COL11A2	P13942	1736 aa	Predicted RBP	6.52	□□□□□ -1.37
HDAC6-223	ENST00000480525	CDHR2	Q9BYE9	1310 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	PDE6B	P35913	854 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	EXOSC9	Q06265	439 aa	Known RBP	6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	DDR1	Q08345	913 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	FLII	Q13045	1269 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	COPS6	Q7L5N1	327 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	TSPYL6	Q8N831	410 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	METTL22	Q9BUU2	404 aa	Predicted RBP	6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	LAS1L	Q9Y4W2	734 aa	Known RBP	6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	ADCY9	O60503	1353 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	RTL9	Q8NET4	1388 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	SBF1	O95248	1867 aa		6.51	□□□□□ -1.37
HDAC6-223	ENST00000480525	ALDH1L1	O75891	902 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	NTSR2	O95665	410 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	SERPINB2	P05120	415 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	EIF2S2	P20042	333 aa	Known RBP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	HOXA10	P31260	410 aa	Predicted RBP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	ST5	P78524	1137 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	KRT24	Q2M2I5	525 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	PROSER3	Q2NL68	480 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	SOGA3	Q5TF21	947 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	TBC1D9B	Q66K14	1250 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	PRR5L	Q6MZQ0	368 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	TMC4	Q7Z404	712 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	CNBD1	Q8NA66	436 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	LINS1	Q8NG48	757 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	XAGE3	Q8WTP9	111 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	PLA2G12B	Q9BX93	195 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	PPP1R1B	Q9UD71	204 aa	Predicted RBP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	SRP68	Q9UHB9	627 aa	Known RBP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	TBC1D2B	Q9UPU7	963 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	NIP7	Q9Y221	180 aa	Known RBP eCLIP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	UTY	O14607	1347 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	UBN2	Q6ZU65	1347 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	SH3TC1	Q8TE82	1336 aa		6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	ZC3H4	Q9UPT8	1303 aa	Known RBP	6.5	□□□□□ -1.37
HDAC6-223	ENST00000480525	TNRC6C	Q9HCJ0	1690 aa	Known RBP	6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	MSH5	O43196	834 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	GRIN3B	O60391	1043 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	SLC4A2	P04920	1241 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	MYL6B	P14649	208 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	NEXN	Q0ZGT2	675 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	CC2D2B	Q6DHV5	1058 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	STYK1	Q6J9G0	422 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	TTLL7	Q6ZT98	887 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	NLRP10	Q86W26	655 aa		6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	NBPF5P	Q86XG9	351 aa	Predicted RBP	6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.49	□□□□□ -1.37
HDAC6-223	ENST00000480525	HDAC5	Q9UQL6	1122 aa		6.49	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms