RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NUP98P52948 1817 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 RGL2O15211 777 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 TTLL7Q6ZT98 887 aa18.58■□□□□ 0.56
UPF3A-204ENST00000475218 RUNDC1Q96C34 613 aa18.58■□□□□ 0.56
UPF3A-204ENST00000475218 SLX4Q8IY92 1834 aa18.57■□□□□ 0.56
UPF3A-204ENST00000475218 PDE6BP35913 854 aa18.57■□□□□ 0.56
UPF3A-204ENST00000475218 ARFGEF2Q9Y6D5 1785 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NFKBIEO00221 500 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 CACNA1SQ13698 1873 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 PDIA6Q15084 440 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NEUROD2Q15784 382 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NGEFQ8N5V2 710 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 SRGNP10124 158 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 BABAM1Q9NWV8 329 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 RNF181Q9P0P0 153 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 NIP7Q9Y221 180 aaKnown RBP eCLIP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 ZNF652Q9Y2D9 606 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 TNRC6CQ9HCJ0 1690 aaKnown RBP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 FER1L6Q2WGJ9 1857 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 SENP3-EIF4A1A0A087X0R7 540 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 MYL6BP14649 208 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 WDR43Q15061 677 aaKnown RBP eCLIP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 KRT24Q2M2I5 525 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 NBPF5PQ86XG9 351 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 ZNF622Q969S3 477 aaKnown RBP eCLIP18.55■□□□□ 0.562e-6■■□□□ 12.5
UPF3A-204ENST00000475218 NMRK2Q9NPI5 230 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 CCDC88AQ3V6T2 1871 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 MAP3K15Q6ZN16 1313 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 KLRG2A4D1S0 409 aaPredicted RBP18.54■□□□□ 0.56
UPF3A-204ENST00000475218 CHL1O00533 1208 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 LMOD3Q0VAK6 560 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 PROSER3Q2NL68 480 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 PDZRN3Q9UPQ7 1066 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 ERVV-1B6SEH8 477 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 ST5P78524 1137 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 CCDC184Q52MB2 194 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 ERBB4Q15303 1308 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 UBN2Q6ZU65 1347 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 TIAM2Q8IVF5 1701 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 C21orf2O43822 256 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 ANXA1P04083 346 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 STYK1Q6J9G0 422 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 ABCC12Q96J65 1359 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 FAM177BA6PVY3 158 aa18.51■□□□□ 0.55
UPF3A-204ENST00000475218 ZBTB3Q9H5J0 574 aa18.51■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF219Q9P2Y4 722 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-204ENST00000475218 EIF2S2P20042 333 aaKnown RBP18.5■□□□□ 0.55
UPF3A-204ENST00000475218 LMNB1P20700 586 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 PRPF40BQ6NWY9 871 aaKnown RBP18.5■□□□□ 0.55
UPF3A-204ENST00000475218 C7orf43Q8WVR3 580 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 MASTLQ96GX5 879 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 NPHP1O15259 732 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 TPTE2Q6XPS3 522 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF34Q8IZ26 560 aa18.49■□□□□ 0.55
UPF3A-204ENST00000475218 DICER1Q9UPY3 1922 aaKnown RBP18.48■□□□□ 0.55
UPF3A-204ENST00000475218 KIF6Q6ZMV9 814 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 NUTM1Q86Y26 1132 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 CNKSR1Q969H4 720 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 APAF1O14727 1248 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 GPTP24298 496 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 SUSD4Q5VX71 490 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 GIGYF2Q6Y7W6 1299 aaKnown RBP18.47■□□□□ 0.55
UPF3A-204ENST00000475218 NECTIN2Q92692 538 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 ZEB1P37275 1124 aaPredicted RBP18.47■□□□□ 0.55
UPF3A-204ENST00000475218 ERFEQ4G0M1 354 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 IBTKQ9P2D0 1353 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 LTBP3Q9NS15 1303 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ZC3H4Q9UPT8 1303 aaKnown RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 NTSR2O95665 410 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF853P0CG23 659 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 NPR1P16066 1061 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 CRY2Q49AN0 593 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 OLFM4Q6UX06 510 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 LAS1LQ9Y4W2 734 aaKnown RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 RIC1Q4ADV7 1423 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ANKRD36CQ5JPF3 1778 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 SNED1Q8TER0 1413 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 TOMM70O94826 608 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 C3orf67Q6ZVT6 689 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 CFAP44Q96MT7 982 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 HSPA6P17066 643 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 COPS6Q7L5N1 327 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 SLC51AQ86UW1 340 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 MBIPQ9NS73 344 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 KDM2BQ8NHM5 1336 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 XAGE3Q8WTP9 111 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 NYXQ9GZU5 481 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 RRAGCQ9HB90 399 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 DDX21Q9NR30 783 aaKnown RBP eCLIP18.43■□□□□ 0.54
UPF3A-204ENST00000475218 GLTPD2A6NH11 291 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 TAOK3Q9H2K8 898 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 CHPF2Q9P2E5 772 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 POTECB2RU33 542 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 HOXB7P09629 217 aa18.4■□□□□ 0.54
UPF3A-204ENST00000475218 GTF2E1P29083 439 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 HOXA10P31260 410 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 AIMP1Q12904 312 aaKnown RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 WDR90Q96KV7 1748 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms