RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PLEKHF1Q96S99 279 aa11.84□□□□□ -0.51
HDAC3-205ENST00000469550 KIAA1551Q9HCM1 1747 aa11.84□□□□□ -0.51
HDAC3-205ENST00000469550 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 TNNT2P45379 298 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 BRPF1P55201 1214 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ALDH1L2Q3SY69 923 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 CHD1LQ86WJ1 897 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 KIF2CQ99661 725 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 CHMP4BQ9H444 224 aaKnown RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ADCY9O60503 1353 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ERVV-2B6SEH9 535 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 TMPOP42166 694 aaKnown RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ITPK1Q13572 414 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 VSIG10Q8N0Z9 540 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ZNF428Q96B54 188 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ZMYND15Q9H091 742 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 PDCL3Q9H2J4 239 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ATG3Q9NT62 314 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 ASAP1Q9ULH1 1129 aa11.83□□□□□ -0.52
HDAC3-205ENST00000469550 NOB1Q9ULX3 412 aaKnown RBP11.83□□□□□ -0.52
HDAC3-205ENST00000469550 GOLGA6L22H0YM25 854 aa11.82□□□□□ -0.52
HDAC3-205ENST00000469550 K7ELQ4 463 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-205ENST00000469550 HS1BP3Q53T59 392 aa11.82□□□□□ -0.52
HDAC3-205ENST00000469550 TMEM57Q8N5G2 664 aa11.82□□□□□ -0.52
HDAC3-205ENST00000469550 GCC1Q96CN9 775 aa11.82□□□□□ -0.52
HDAC3-205ENST00000469550 TRIM35Q9UPQ4 493 aa11.82□□□□□ -0.52
HDAC3-205ENST00000469550 KDM6AO15550 1401 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-205ENST00000469550 KLHL40Q2TBA0 621 aa11.81□□□□□ -0.52
HDAC3-205ENST00000469550 ZSCAN30Q86W11 494 aa11.81□□□□□ -0.52
HDAC3-205ENST00000469550 TSR2Q969E8 191 aaKnown RBP11.81□□□□□ -0.52
HDAC3-205ENST00000469550 DCAF5Q96JK2 942 aa11.81□□□□□ -0.52
HDAC3-205ENST00000469550 C4AP0C0L4 1744 aa11.81□□□□□ -0.52
HDAC3-205ENST00000469550 GIGYF1O75420 1035 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-205ENST00000469550 SCN11AQ9UI33 1791 aa11.81□□□□□ -0.52
HDAC3-205ENST00000469550 GNPATO15228 680 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 OFD1O75665 1012 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 ATP6V1AP38606 617 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 AMOTQ4VCS5 1084 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 PLEKHO1Q53GL0 409 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-205ENST00000469550 ANP32BQ92688 251 aaKnown RBP11.8□□□□□ -0.52
HDAC3-205ENST00000469550 CFAP44Q96MT7 982 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 ATP10DQ9P241 1426 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 COL3A1P02461 1466 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-205ENST00000469550 CNTNAP4Q9C0A0 1308 aa11.8□□□□□ -0.52
HDAC3-205ENST00000469550 PHF14O94880 888 aa11.79□□□□□ -0.52
HDAC3-205ENST00000469550 ADRA2BP18089 450 aa11.79□□□□□ -0.52
HDAC3-205ENST00000469550 NASPP49321 788 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-205ENST00000469550 RC3H1Q5TC82 1133 aaKnown RBP11.79□□□□□ -0.52
HDAC3-205ENST00000469550 TJP1Q07157 1748 aa11.79□□□□□ -0.52
HDAC3-205ENST00000469550 ZNF445P59923 1031 aa11.79□□□□□ -0.52
HDAC3-205ENST00000469550 LNPKQ9C0E8 428 aa11.79□□□□□ -0.52
HDAC3-205ENST00000469550 MYH14Q7Z406 1995 aaKnown RBP11.79□□□□□ -0.52
HDAC3-205ENST00000469550 C10orf71Q711Q0 1435 aa11.78□□□□□ -0.52
HDAC3-205ENST00000469550 BRCA1P38398 1863 aaKnown RBP11.78□□□□□ -0.52
HDAC3-205ENST00000469550 ARHGAP45Q92619 1136 aa11.78□□□□□ -0.52
HDAC3-205ENST00000469550 SLC4A9Q96Q91 983 aa11.78□□□□□ -0.52
HDAC3-205ENST00000469550 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-205ENST00000469550 SMIM5Q71RC9 77 aa11.78□□□□□ -0.52
HDAC3-205ENST00000469550 PXDNLA1KZ92 1463 aa11.77□□□□□ -0.52
HDAC3-205ENST00000469550 ADAMTS7Q9UKP4 1686 aa11.77□□□□□ -0.52
HDAC3-205ENST00000469550 MRC1P22897 1456 aa11.77□□□□□ -0.53
HDAC3-205ENST00000469550 BAG4O95429 457 aaKnown RBP11.77□□□□□ -0.53
HDAC3-205ENST00000469550 ZNF530Q6P9A1 599 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-205ENST00000469550 KIAA1211Q6ZU35 1233 aa11.77□□□□□ -0.53
HDAC3-205ENST00000469550 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.53
HDAC3-205ENST00000469550 UTRNP46939 3433 aa11.77□□□□□ -0.53
HDAC3-205ENST00000469550 ZBTB7BO15156 539 aaPredicted RBP11.76□□□□□ -0.53
HDAC3-205ENST00000469550 NUCB2P80303 420 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 TBC1D9Q6ZT07 1266 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 NLGN1Q8N2Q7 840 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 N4BP2Q86UW6 1770 aaPredicted RBP11.76□□□□□ -0.53
HDAC3-205ENST00000469550 RPS6KA4O75676 772 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 CD2BP2O95400 341 aaKnown RBP11.76□□□□□ -0.53
HDAC3-205ENST00000469550 TRAPPC3LQ5T215 181 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 MAP7D2Q96T17 732 aa11.76□□□□□ -0.53
HDAC3-205ENST00000469550 DDX49Q9Y6V7 483 aaKnown RBP11.76□□□□□ -0.53
HDAC3-205ENST00000469550 ARFGEF1Q9Y6D6 1849 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 MMP10P09238 476 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 MSNP26038 577 aaKnown RBP11.75□□□□□ -0.53
HDAC3-205ENST00000469550 IL13P35225 146 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 RIPK4P57078 832 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 CABP4P57796 275 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 TGFB2P61812 414 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 RABEP1Q15276 862 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 AEBP1Q8IUX7 1158 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 GAS2L2Q8NHY3 880 aa11.75□□□□□ -0.53
HDAC3-205ENST00000469550 ZNF500O60304 480 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 CDC45O75419 566 aa11.74□□□□□ -0.53
HDAC3-205ENST00000469550 ANKRD45Q5TZF3 282 aa11.74□□□□□ -0.53
HDAC3-205ENST00000469550 U2SURPO15042 1029 aaKnown RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 CYP2E1P05181 493 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 C1orf141Q5JVX7 400 aa11.74□□□□□ -0.53
HDAC3-205ENST00000469550 ARHGEF1Q92888 912 aaKnown RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 PDLIM2Q96JY6 352 aa11.74□□□□□ -0.53
HDAC3-205ENST00000469550 RBM42Q9BTD8 480 aaKnown RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 NOL7Q9UMY1 257 aaKnown RBP11.74□□□□□ -0.53
HDAC3-205ENST00000469550 GYS1P13807 737 aa11.73□□□□□ -0.53
HDAC3-205ENST00000469550 MCM5P33992 734 aa11.73□□□□□ -0.53
HDAC3-205ENST00000469550 CWC22Q9HCG8 908 aaKnown RBP11.73□□□□□ -0.53
HDAC3-205ENST00000469550 CALD1Q05682 793 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms