RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 NUP98P52948 1817 aa25.46■■□□□ 1.67
USP40-207ENST00000450940 COL11A2P13942 1736 aaPredicted RBP25.46■■□□□ 1.67
USP40-207ENST00000450940 GPBP1L1Q9HC44 474 aaPredicted RBP25.45■■□□□ 1.66
USP40-207ENST00000450940 ERVV-1B6SEH8 477 aa25.44■■□□□ 1.66
USP40-207ENST00000450940 CHL1O00533 1208 aa25.44■■□□□ 1.66
USP40-207ENST00000450940 NEUROD2Q15784 382 aa25.44■■□□□ 1.66
USP40-207ENST00000450940 HLFQ16534 295 aa25.43■■□□□ 1.66
USP40-207ENST00000450940 CCDC24Q8N4L8 307 aa25.43■■□□□ 1.66
USP40-207ENST00000450940 ST5P78524 1137 aa25.42■■□□□ 1.66
USP40-207ENST00000450940 MAP3K15Q6ZN16 1313 aa25.41■■□□□ 1.66
USP40-207ENST00000450940 C9orf131Q5VYM1 1079 aa25.41■■□□□ 1.66
USP40-207ENST00000450940 NBPF5PQ86XG9 351 aaPredicted RBP25.41■■□□□ 1.66
USP40-207ENST00000450940 NIP7Q9Y221 180 aaKnown RBP eCLIP25.41■■□□□ 1.66
USP40-207ENST00000450940 PDIA6Q15084 440 aa25.4■■□□□ 1.66
USP40-207ENST00000450940 TPTE2Q6XPS3 522 aa25.4■■□□□ 1.66
USP40-207ENST00000450940 TTLL7Q6ZT98 887 aa25.4■■□□□ 1.66
USP40-207ENST00000450940 LRP10Q7Z4F1 713 aa25.4■■□□□ 1.66
USP40-207ENST00000450940 KLRG2A4D1S0 409 aaPredicted RBP25.39■■□□□ 1.66
USP40-207ENST00000450940 SRGNP10124 158 aa25.39■■□□□ 1.66
USP40-207ENST00000450940 MYL6BP14649 208 aa25.39■■□□□ 1.66
USP40-207ENST00000450940 NGEFQ8N5V2 710 aa25.39■■□□□ 1.66
USP40-207ENST00000450940 ZNF526Q8TF50 670 aaPredicted RBP25.39■■□□□ 1.66
USP40-207ENST00000450940 ARFGEF2Q9Y6D5 1785 aa25.39■■□□□ 1.65
USP40-207ENST00000450940 ZNF316A6NFI3 1004 aaPredicted RBP25.38■■□□□ 1.65
USP40-207ENST00000450940 NPHP1O15259 732 aa25.38■■□□□ 1.65
USP40-207ENST00000450940 STYK1Q6J9G0 422 aa25.38■■□□□ 1.65
USP40-207ENST00000450940 ZNF622Q969S3 477 aaKnown RBP eCLIP25.38■■□□□ 1.65
USP40-207ENST00000450940 KIF6Q6ZMV9 814 aa25.37■■□□□ 1.65
USP40-207ENST00000450940 SLX4Q8IY92 1834 aa25.37■■□□□ 1.65
USP40-207ENST00000450940 CCDC88AQ3V6T2 1871 aa25.36■■□□□ 1.65
USP40-207ENST00000450940 FER1L6Q2WGJ9 1857 aa25.36■■□□□ 1.65
USP40-207ENST00000450940 EIF2S2P20042 333 aaKnown RBP25.35■■□□□ 1.65
USP40-207ENST00000450940 CNKSR1Q969H4 720 aa25.35■■□□□ 1.65
USP40-207ENST00000450940 MASTLQ96GX5 879 aa25.35■■□□□ 1.65
USP40-207ENST00000450940 CFAP44Q96MT7 982 aa25.35■■□□□ 1.65
USP40-207ENST00000450940 RNF181Q9P0P0 153 aa25.35■■□□□ 1.65
USP40-207ENST00000450940 APAF1O14727 1248 aa25.34■■□□□ 1.65
USP40-207ENST00000450940 KIF3CO14782 793 aa25.34■■□□□ 1.65
USP40-207ENST00000450940 CACNA1SQ13698 1873 aa25.34■■□□□ 1.65
USP40-207ENST00000450940 NFKBIEO00221 500 aa25.33■■□□□ 1.65
USP40-207ENST00000450940 PRELPP51888 382 aa25.33■■□□□ 1.65
USP40-207ENST00000450940 RASSF7Q02833 373 aa25.33■■□□□ 1.65
USP40-207ENST00000450940 GIGYF2Q6Y7W6 1299 aaKnown RBP25.33■■□□□ 1.65
USP40-207ENST00000450940 ZNF34Q8IZ26 560 aa25.33■■□□□ 1.65
USP40-207ENST00000450940 IBTKQ9P2D0 1353 aaPredicted RBP25.32■■□□□ 1.64
USP40-207ENST00000450940 ZNF853P0CG23 659 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 LMNB1P20700 586 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 PROSER3Q2NL68 480 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 CCDC184Q52MB2 194 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 NYXQ9GZU5 481 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 ZBTB3Q9H5J0 574 aa25.32■■□□□ 1.64
USP40-207ENST00000450940 ZC3H4Q9UPT8 1303 aaKnown RBP25.32■■□□□ 1.64
USP40-207ENST00000450940 C21orf2O43822 256 aa25.31■■□□□ 1.64
USP40-207ENST00000450940 HOXB7P09629 217 aa25.31■■□□□ 1.64
USP40-207ENST00000450940 NPR1P16066 1061 aa25.31■■□□□ 1.64
USP40-207ENST00000450940 KRT24Q2M2I5 525 aa25.31■■□□□ 1.64
USP40-207ENST00000450940 LAS1LQ9Y4W2 734 aaKnown RBP25.31■■□□□ 1.64
USP40-207ENST00000450940 PRPF40BQ6NWY9 871 aaKnown RBP25.3■■□□□ 1.64
USP40-207ENST00000450940 DDX21Q9NR30 783 aaKnown RBP eCLIP25.3■■□□□ 1.64
USP40-207ENST00000450940 UBN2Q6ZU65 1347 aa25.3■■□□□ 1.64
USP40-207ENST00000450940 DICER1Q9UPY3 1922 aaKnown RBP25.29■■□□□ 1.64
USP40-207ENST00000450940 RIC1Q4ADV7 1423 aa25.29■■□□□ 1.64
USP40-207ENST00000450940 FAM177BA6PVY3 158 aa25.29■■□□□ 1.64
USP40-207ENST00000450940 C7orf43Q8WVR3 580 aa25.29■■□□□ 1.64
USP40-207ENST00000450940 LTBP3Q9NS15 1303 aa25.29■■□□□ 1.64
USP40-207ENST00000450940 ANXA1P04083 346 aa25.28■■□□□ 1.64
USP40-207ENST00000450940 TNRC6CQ9HCJ0 1690 aaKnown RBP25.28■■□□□ 1.64
USP40-207ENST00000450940 ANKRD36CQ5JPF3 1778 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 GTF2E1P29083 439 aaPredicted RBP25.27■■□□□ 1.64
USP40-207ENST00000450940 CALD1Q05682 793 aaKnown RBP25.27■■□□□ 1.64
USP40-207ENST00000450940 CRY2Q49AN0 593 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 SOGA3Q5TF21 947 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 SUSD4Q5VX71 490 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 MBIPQ9NS73 344 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 IFT57Q9NWB7 429 aa25.27■■□□□ 1.64
USP40-207ENST00000450940 GPTP24298 496 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 PARP10Q53GL7 1025 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 COPS6Q7L5N1 327 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 NECTIN2Q92692 538 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 NMRK2Q9NPI5 230 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 KDM2BQ8NHM5 1336 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 ABCC12Q96J65 1359 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 TIAM2Q8IVF5 1701 aa25.26■■□□□ 1.63
USP40-207ENST00000450940 SENP3-EIF4A1A0A087X0R7 540 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 NTSR2O95665 410 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 GNAI1P63096 354 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 ERFEQ4G0M1 354 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 NUTM1Q86Y26 1132 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 XAGE3Q8WTP9 111 aa25.25■■□□□ 1.63
USP40-207ENST00000450940 ZNF219Q9P2Y4 722 aaPredicted RBP25.25■■□□□ 1.63
USP40-207ENST00000450940 HDGFL1Q5TGJ6 251 aa25.24■■□□□ 1.63
USP40-207ENST00000450940 ALDH1B1P30837 517 aa25.23■■□□□ 1.63
USP40-207ENST00000450940 DUSP27Q5VZP5 1158 aa25.23■■□□□ 1.63
USP40-207ENST00000450940 PPP1R42Q7Z4L9 355 aa25.23■■□□□ 1.63
USP40-207ENST00000450940 CHPF2Q9P2E5 772 aa25.23■■□□□ 1.63
USP40-207ENST00000450940 ANP32CO43423 234 aa25.22■■□□□ 1.63
USP40-207ENST00000450940 TOMM70O94826 608 aa25.22■■□□□ 1.63
USP40-207ENST00000450940 HOXA10P31260 410 aaPredicted RBP25.22■■□□□ 1.63
USP40-207ENST00000450940 TAOK3Q9H2K8 898 aa25.22■■□□□ 1.63
USP40-207ENST00000450940 DBF4Q9UBU7 674 aaPredicted RBP25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms