RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SSH3Q8TE77 659 aa17.75■□□□□ 0.43
USP39-207ENST00000450066 ARFGEF2Q9Y6D5 1785 aa17.74■□□□□ 0.43
USP39-207ENST00000450066 GCKRQ14397 625 aa17.74■□□□□ 0.43
USP39-207ENST00000450066 CYP19A1P11511 503 aaPredicted RBP17.73■□□□□ 0.43
USP39-207ENST00000450066 TTLL7Q6ZT98 887 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 ZBTB47Q9UFB7 747 aaPredicted RBP17.73■□□□□ 0.43
USP39-207ENST00000450066 ATRNO75882 1429 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 A0A0G2JS52 829 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 MYT1Q01538 1121 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 MTX1Q13505 466 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 POLA2Q14181 598 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 PPP1R42Q7Z4L9 355 aa17.73■□□□□ 0.43
USP39-207ENST00000450066 TRPC5Q9UL62 973 aaPredicted RBP17.73■□□□□ 0.43
USP39-207ENST00000450066 ONECUT3O60422 494 aaPredicted RBP17.71■□□□□ 0.43
USP39-207ENST00000450066 NUP188Q5SRE5 1749 aa17.71■□□□□ 0.43
USP39-207ENST00000450066 SRGAP3O43295 1099 aa17.71■□□□□ 0.43
USP39-207ENST00000450066 SMARCC1Q92922 1105 aaPredicted RBP17.71■□□□□ 0.43
USP39-207ENST00000450066 TJP1Q07157 1748 aa17.71■□□□□ 0.43
USP39-207ENST00000450066 KCNQ2O43526 872 aa17.7■□□□□ 0.42
USP39-207ENST00000450066 EXOC6BQ9Y2D4 811 aa17.7■□□□□ 0.42
USP39-207ENST00000450066 LOC102724428A0A0B4J2F2 783 aa17.69■□□□□ 0.42
USP39-207ENST00000450066 SIK1P57059 783 aa17.69■□□□□ 0.42
USP39-207ENST00000450066 KAZALD1Q96I82 304 aa17.69■□□□□ 0.42
USP39-207ENST00000450066 PALLDQ8WX93 1383 aa17.69■□□□□ 0.42
USP39-207ENST00000450066 ATP5J2-PTCD1G3V325 749 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 SUCLG2Q96I99 432 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 ZBTB3Q9H5J0 574 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 CICQ96RK0 1608 aaPredicted RBP17.68■□□□□ 0.42
USP39-207ENST00000450066 COL15A1P39059 1388 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 APBB1O00213 710 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 KIF6Q6ZMV9 814 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 LRRCC1Q9C099 1032 aa17.68■□□□□ 0.42
USP39-207ENST00000450066 AFDNP55196 1824 aaKnown RBP17.68■□□□□ 0.42
USP39-207ENST00000450066 ATP6V1AP38606 617 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 BMP2KLQ5H9B9 411 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 PLEKHM2Q8IWE5 1019 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 ZNF330Q9Y3S2 320 aaPredicted RBP17.67■□□□□ 0.42
USP39-207ENST00000450066 SMARCA5O60264 1052 aaPredicted RBP17.67■□□□□ 0.42
USP39-207ENST00000450066 RAB11FIP3O75154 756 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 IL6STP40189 918 aaPredicted RBP17.67■□□□□ 0.42
USP39-207ENST00000450066 CCDC191Q8NCU4 936 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 BICC1Q9H694 974 aaKnown RBP17.67■□□□□ 0.42
USP39-207ENST00000450066 ZBTB1Q9Y2K1 713 aa17.67■□□□□ 0.42
USP39-207ENST00000450066 A0A087WZG4 1122 aa17.66■□□□□ 0.42
USP39-207ENST00000450066 C16orf71Q8IYS4 520 aaPredicted RBP17.66■□□□□ 0.42
USP39-207ENST00000450066 QTRT2Q9H974 415 aaKnown RBP17.66■□□□□ 0.42
USP39-207ENST00000450066 CWC25Q9NXE8 425 aaPredicted RBP17.66■□□□□ 0.42
USP39-207ENST00000450066 SURF6O75683 361 aaKnown RBP17.65■□□□□ 0.42
USP39-207ENST00000450066 HSP90AB4PQ58FF6 505 aa17.65■□□□□ 0.42
USP39-207ENST00000450066 NOP58Q9Y2X3 529 aaKnown RBP17.65■□□□□ 0.42
USP39-207ENST00000450066 ZNF831Q5JPB2 1677 aa17.65■□□□□ 0.42
USP39-207ENST00000450066 MAP3K15Q6ZN16 1313 aa17.65■□□□□ 0.42
USP39-207ENST00000450066 TRIM28Q13263 835 aaKnown RBP17.65■□□□□ 0.42
USP39-207ENST00000450066 TCIRG1Q13488 830 aa17.65■□□□□ 0.42
USP39-207ENST00000450066 UBE3BQ7Z3V4 1068 aa17.65■□□□□ 0.42
USP39-207ENST00000450066 H7C1W4 665 aa17.64■□□□□ 0.41
USP39-207ENST00000450066 CASP7P55210 303 aa17.64■□□□□ 0.41
USP39-207ENST00000450066 SEPT12Q8IYM1 358 aa17.64■□□□□ 0.41
USP39-207ENST00000450066 ISCA1Q9BUE6 129 aa17.64■□□□□ 0.41
USP39-207ENST00000450066 CCDC87Q9NVE4 849 aa17.64■□□□□ 0.41
USP39-207ENST00000450066 ITPK1Q13572 414 aa17.63■□□□□ 0.41
USP39-207ENST00000450066 INTS5Q6P9B9 1019 aaKnown RBP17.63■□□□□ 0.41
USP39-207ENST00000450066 CRKLP46109 303 aaKnown RBP17.63■□□□□ 0.41
USP39-207ENST00000450066 GIGYF2Q6Y7W6 1299 aaKnown RBP17.63■□□□□ 0.41
USP39-207ENST00000450066 NPM2Q86SE8 214 aaKnown RBP17.63■□□□□ 0.41
USP39-207ENST00000450066 NHSQ6T4R5 1651 aa17.63■□□□□ 0.41
USP39-207ENST00000450066 RREB1Q92766 1687 aa17.62■□□□□ 0.41
USP39-207ENST00000450066 EIF5P55010 431 aaKnown RBP17.62■□□□□ 0.41
USP39-207ENST00000450066 OTUD7AQ8TE49 926 aaPredicted RBP17.62■□□□□ 0.41
USP39-207ENST00000450066 ERVV-1B6SEH8 477 aa17.62■□□□□ 0.41
USP39-207ENST00000450066 RABL6Q3YEC7 729 aaPredicted RBP17.62■□□□□ 0.41
USP39-207ENST00000450066 EPHA10Q5JZY3 1008 aa17.62■□□□□ 0.41
USP39-207ENST00000450066 KIF1BPQ96EK5 621 aa17.62■□□□□ 0.41
USP39-207ENST00000450066 OSBPL3Q9H4L5 887 aa17.62■□□□□ 0.41
USP39-207ENST00000450066 HSP90AB3PQ58FF7 597 aa17.61■□□□□ 0.41
USP39-207ENST00000450066 RHPN1Q8TCX5 695 aa17.61■□□□□ 0.41
USP39-207ENST00000450066 ARXQ96QS3 562 aa17.61■□□□□ 0.41
USP39-207ENST00000450066 BCL11AQ9H165 835 aa17.61■□□□□ 0.41
USP39-207ENST00000450066 ANP32AP39687 249 aaKnown RBP17.6■□□□□ 0.41
USP39-207ENST00000450066 TTC22Q5TAA0 569 aa17.6■□□□□ 0.41
USP39-207ENST00000450066 PTF1AQ7RTS3 328 aa17.6■□□□□ 0.41
USP39-207ENST00000450066 JARID2Q92833 1246 aaPredicted RBP17.6■□□□□ 0.41
USP39-207ENST00000450066 SALL3Q9BXA9 1300 aa17.6■□□□□ 0.41
USP39-207ENST00000450066 FAM182BQ5T319 152 aa17.6■□□□□ 0.41
USP39-207ENST00000450066 DZIP3Q86Y13 1208 aaKnown RBP17.6■□□□□ 0.41
USP39-207ENST00000450066 SEC24BO95487 1268 aa17.59■□□□□ 0.41
USP39-207ENST00000450066 HLFQ16534 295 aa17.59■□□□□ 0.41
USP39-207ENST00000450066 ERC1Q8IUD2 1116 aa17.59■□□□□ 0.41
USP39-207ENST00000450066 BTAF1O14981 1849 aa17.59■□□□□ 0.41
USP39-207ENST00000450066 COL5A3P25940 1745 aaPredicted RBP17.59■□□□□ 0.41
USP39-207ENST00000450066 GSPT1P15170 499 aaKnown RBP17.59■□□□□ 0.41
USP39-207ENST00000450066 PDE1AP54750 535 aa17.59■□□□□ 0.41
USP39-207ENST00000450066 OS9Q13438 667 aaPredicted RBP17.59■□□□□ 0.41
USP39-207ENST00000450066 TBC1D2BQ9UPU7 963 aa17.58■□□□□ 0.4
USP39-207ENST00000450066 PA2G4Q9UQ80 394 aaKnown RBP17.58■□□□□ 0.4
USP39-207ENST00000450066 MX1P20591 662 aa17.57■□□□□ 0.4
USP39-207ENST00000450066 FOXO4P98177 505 aa17.57■□□□□ 0.4
USP39-207ENST00000450066 IL1RAPL2Q9NP60 686 aa17.57■□□□□ 0.4
USP39-207ENST00000450066 STAP2Q9UGK3 403 aa17.57■□□□□ 0.4
USP39-207ENST00000450066 MYH14Q7Z406 1995 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 270.5 ms