RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 ANKRD24Q8TF21 1146 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 FAM227BQ96M60 508 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 TTC14Q96N46 770 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 NECAB1Q8N987 351 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 ECHDC1Q9NTX5 307 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 TLR7Q9NYK1 1049 aaKnown RBP16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 LIMCH1Q9UPQ0 1083 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 KCNJ4P48050 445 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 SUCLG2Q96I99 432 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 PDLIM2Q96JY6 352 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 SMC3Q9UQE7 1217 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 RPAP1Q9BWH6 1393 aaPredicted RBP16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 HSP90AB4PQ58FF6 505 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 KSR2Q6VAB6 950 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 TSPY26PQ9H489 355 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 BICC1Q9H694 974 aaKnown RBP16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 LRRC37A3O60309 1634 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 ANKLE2Q86XL3 938 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 KCNH5Q8NCM2 988 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 BOLA2Q9H3K6 86 aa16.31■□□□□ 0.2
HERPUD1-204ENST00000439977 STX6O43752 255 aa16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 EAF2Q96CJ1 260 aaPredicted RBP16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 PXDNLA1KZ92 1463 aa16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 KAZALD1Q96I82 304 aa16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 R3HCC1Q9Y3T6 440 aaKnown RBP16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 PXDNQ92626 1479 aa16.3■□□□□ 0.2
HERPUD1-204ENST00000439977 SASH1O94885 1247 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 HOXB7P09629 217 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 ZSCAN22P10073 491 aaPredicted RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 EDC3Q96F86 508 aaKnown RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 PDRG1Q9NUG6 133 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 HYPKQ9NX55 129 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 PTMAP06454 111 aaKnown RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 NOL7Q9UMY1 257 aaKnown RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 CHMP3Q9Y3E7 222 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 CCDC9Q9Y3X0 531 aaKnown RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 NDUFB9Q9Y6M9 179 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 VPS37CA5D8V6 355 aaPredicted RBP16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 GJB2P29033 226 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 ARHGEF25Q86VW2 580 aa16.29■□□□□ 0.2
HERPUD1-204ENST00000439977 GRM8O00222 908 aa16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 PLCB2Q00722 1185 aa16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 RIC3Q7Z5B4 369 aa16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 TAF6LQ9Y6J9 622 aa16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 DNM1Q05193 864 aaKnown RBP16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 ZNF830Q96NB3 372 aaPredicted RBP16.28■□□□□ 0.2
HERPUD1-204ENST00000439977 TTC41PQ6P2S7 1318 aa16.27■□□□□ 0.2
HERPUD1-204ENST00000439977 G3BP1Q13283 466 aaKnown RBP eCLIP16.27■□□□□ 0.23e-10■■□□□ 13.1
HERPUD1-204ENST00000439977 HSP90AA2PQ14568 343 aaPredicted RBP16.27■□□□□ 0.2
HERPUD1-204ENST00000439977 AMOTQ4VCS5 1084 aa16.27■□□□□ 0.2
HERPUD1-204ENST00000439977 FERMT3Q86UX7 667 aa16.27■□□□□ 0.2
HERPUD1-204ENST00000439977 SYAP1Q96A49 352 aaPredicted RBP16.27■□□□□ 0.2
HERPUD1-204ENST00000439977 NMIQ13287 307 aaPredicted RBP16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 FAM173BQ6P4H8 233 aa16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 RUFY2Q8WXA3 655 aa16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 DDX17Q92841 729 aaKnown RBP16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 IL17RAQ96F46 866 aa16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 RBM8AQ9Y5S9 174 aaKnown RBP16.27■□□□□ 0.19
HERPUD1-204ENST00000439977 OFD1O75665 1012 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 CHGBP05060 677 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 HCLS1P14317 486 aaPredicted RBP16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 ME3Q16798 604 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 GPATCH3Q96I76 525 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 USP25Q9UHP3 1055 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 CYP46A1Q9Y6A2 500 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 F13A1P00488 732 aa16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 MARF1Q9Y4F3 1742 aaKnown RBP16.26■□□□□ 0.19
HERPUD1-204ENST00000439977 IGKV5-2P06315 115 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 MTX1Q13505 466 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 NFATC2IPQ8NCF5 419 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 NLRP2Q9NX02 1062 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 A0A0D9SFI3 127 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 ALDH1L1O75891 902 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 RBM10P98175 930 aaKnown RBP16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 EPHA10Q5JZY3 1008 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 GIMAP6Q6P9H5 292 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 LINS1Q8NG48 757 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 ZKSCAN5Q9Y2L8 839 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 ST3GAL1Q11201 340 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 STK3Q13188 491 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 EVI5LQ96CN4 794 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 FSD1Q9BTV5 496 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 TPCN1Q9ULQ1 816 aa16.25■□□□□ 0.19
HERPUD1-204ENST00000439977 CREB3L3Q68CJ9 461 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 COPS6Q7L5N1 327 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 MYD88Q99836 296 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 ZKSCAN1P17029 563 aaPredicted RBP16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 PDIA6Q15084 440 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 NECTIN1Q15223 517 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 XAGE3Q8WTP9 111 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 CCDC171Q6TFL3 1326 aa16.24■□□□□ 0.19
HERPUD1-204ENST00000439977 TUBGCP6Q96RT7 1819 aa16.23■□□□□ 0.19
HERPUD1-204ENST00000439977 CHMP4AQ9BY43 222 aa16.23■□□□□ 0.19
HERPUD1-204ENST00000439977 USP42Q9H9J4 1324 aaKnown RBP16.23■□□□□ 0.19
HERPUD1-204ENST00000439977 ZSWIM6Q9HCJ5 1215 aa16.23■□□□□ 0.19
HERPUD1-204ENST00000439977 MTMR6Q9Y217 621 aa16.23■□□□□ 0.19
HERPUD1-204ENST00000439977 NFAT5O94916 1531 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms