RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 SPATA31A3Q5VYP0 1347 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 GOLGA6L3A6NEY3 463 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 DCAF5Q96JK2 942 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
DDX56-203ENST00000421223 DDIT3P35638 169 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 PI4K2BQ8TCG2 481 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 FMNL2Q96PY5 1086 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 SLAIN2Q9P270 581 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.3□□□□□ -0.28
DDX56-203ENST00000421223 GOLGA6L22H0YM25 854 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 BOLA2Q9H3K6 86 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 MEGF6O75095 1541 aa13.3□□□□□ -0.28
DDX56-203ENST00000421223 A0A0U1RQG5 324 aaPredicted RBP13.29□□□□□ -0.28
DDX56-203ENST00000421223 KCNJ4P48050 445 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 EPHA10Q5JZY3 1008 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 FAM208AQ9UK61 1670 aaKnown RBP13.29□□□□□ -0.28
DDX56-203ENST00000421223 LRRC37A3O60309 1634 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 TMX3Q96JJ7 454 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 CPA1P15085 419 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
DDX56-203ENST00000421223 KAZALD1Q96I82 304 aa13.29□□□□□ -0.28
DDX56-203ENST00000421223 DDX49Q9Y6V7 483 aaKnown RBP13.29□□□□□ -0.28
DDX56-203ENST00000421223 KDM6AO15550 1401 aaPredicted RBP13.28□□□□□ -0.28
DDX56-203ENST00000421223 RGPD5Q99666 1765 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 A0A087WZG4 1122 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 NEURL1BA8MQ27 555 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 GPATCH3Q96I76 525 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 ECHDC1Q9NTX5 307 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 TLR7Q9NYK1 1049 aaKnown RBP13.28□□□□□ -0.28
DDX56-203ENST00000421223 NDUFB9Q9Y6M9 179 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 GLRX3O76003 335 aaKnown RBP13.28□□□□□ -0.28
DDX56-203ENST00000421223 A1BGP04217 495 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 ZBTB3Q9H5J0 574 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 HDAC5Q9UQL6 1122 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 KAT6BQ8WYB5 2073 aa13.28□□□□□ -0.28
DDX56-203ENST00000421223 NCOA3Q9Y6Q9 1424 aa13.27□□□□□ -0.28
DDX56-203ENST00000421223 BAG4O95429 457 aaKnown RBP13.27□□□□□ -0.28
DDX56-203ENST00000421223 GCKRQ14397 625 aa13.27□□□□□ -0.28
DDX56-203ENST00000421223 EAF2Q96CJ1 260 aaPredicted RBP13.27□□□□□ -0.28
DDX56-203ENST00000421223 PANK2Q9BZ23 570 aa13.27□□□□□ -0.28
DDX56-203ENST00000421223 SLIT3O75094 1523 aa13.27□□□□□ -0.28
DDX56-203ENST00000421223 AK9Q5TCS8 1911 aa13.27□□□□□ -0.29
DDX56-203ENST00000421223 SASH1O94885 1247 aa13.27□□□□□ -0.29
DDX56-203ENST00000421223 NCAPD2Q15021 1401 aa13.27□□□□□ -0.29
DDX56-203ENST00000421223 MED1Q15648 1581 aaPredicted RBP13.27□□□□□ -0.29
DDX56-203ENST00000421223 EDC3Q96F86 508 aaKnown RBP13.26□□□□□ -0.29
DDX56-203ENST00000421223 METTL22Q9BUU2 404 aaPredicted RBP13.26□□□□□ -0.29
DDX56-203ENST00000421223 CCDC85AQ96PX6 553 aaPredicted RBP13.26□□□□□ -0.29
DDX56-203ENST00000421223 NUCB2P80303 420 aa13.26□□□□□ -0.29
DDX56-203ENST00000421223 TNS3Q68CZ2 1445 aa13.26□□□□□ -0.29
DDX56-203ENST00000421223 BCL11BQ9C0K0 894 aaPredicted RBP13.26□□□□□ -0.29
DDX56-203ENST00000421223 PXDNLA1KZ92 1463 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 PRPF40AO75400 957 aaKnown RBP13.25□□□□□ -0.29
DDX56-203ENST00000421223 L1TD1Q5T7N2 865 aaKnown RBP13.25□□□□□ -0.29
DDX56-203ENST00000421223 TTLL7Q6ZT98 887 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 ERC1Q8IUD2 1116 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 SGSM2O43147 1006 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 RASEFQ8IZ41 740 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 SYTL4Q96C24 671 aaPredicted RBP13.25□□□□□ -0.29
DDX56-203ENST00000421223 FSD1Q9BTV5 496 aa13.25□□□□□ -0.29
DDX56-203ENST00000421223 XRCC6P12956 609 aaKnown RBP eCLIP13.24□□□□□ -0.29
DDX56-203ENST00000421223 PRPF40BQ6NWY9 871 aaKnown RBP13.24□□□□□ -0.29
DDX56-203ENST00000421223 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.24□□□□□ -0.292e-6■□□□□ 10.5
DDX56-203ENST00000421223 FAM227BQ96M60 508 aa13.24□□□□□ -0.29
DDX56-203ENST00000421223 HEG1Q9ULI3 1381 aa13.24□□□□□ -0.29
DDX56-203ENST00000421223 PTH1RQ03431 593 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 NEUROD6Q96NK8 337 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 DNAJC2Q99543 621 aaKnown RBP13.23□□□□□ -0.29
DDX56-203ENST00000421223 MTX1Q13505 466 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 LMBR1LQ6UX01 489 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 CACNA1FO60840 1977 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 IL2RBP14784 551 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 CASTP20810 708 aaKnown RBP13.23□□□□□ -0.29
DDX56-203ENST00000421223 TFCP2Q12800 502 aa13.23□□□□□ -0.29
DDX56-203ENST00000421223 NBPF26B4DH59 902 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 NBPF14Q5TI25 921 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 CAVIN1Q6NZI2 390 aaKnown RBP13.22□□□□□ -0.29
DDX56-203ENST00000421223 NBPF10Q6P3W6 841 aaKnown RBP13.22□□□□□ -0.29
DDX56-203ENST00000421223 NBPF15Q8N660 670 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 RUFY2Q8WXA3 655 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 CWC22Q9HCG8 908 aaKnown RBP13.22□□□□□ -0.29
DDX56-203ENST00000421223 AOX1Q06278 1338 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 USP54Q70EL1 1684 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 WDR17Q8IZU2 1322 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 HSPA4P34932 840 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 SNX14Q9Y5W7 946 aa13.22□□□□□ -0.29
DDX56-203ENST00000421223 TTC41PQ6P2S7 1318 aa13.21□□□□□ -0.29
DDX56-203ENST00000421223 TCEANC2Q96MN5 208 aa13.21□□□□□ -0.29
DDX56-203ENST00000421223 JAKMIP1Q96N16 626 aaKnown RBP13.21□□□□□ -0.29
DDX56-203ENST00000421223 TULP1O00294 542 aaPredicted RBP13.21□□□□□ -0.29
DDX56-203ENST00000421223 LSG1Q9H089 658 aaKnown RBP13.21□□□□□ -0.29
DDX56-203ENST00000421223 TRPM3Q9HCF6 1732 aaPredicted RBP13.21□□□□□ -0.3
DDX56-203ENST00000421223 CHGBP05060 677 aa13.21□□□□□ -0.3
DDX56-203ENST00000421223 NMIQ13287 307 aaPredicted RBP13.21□□□□□ -0.3
DDX56-203ENST00000421223 GDPD2Q9HCC8 539 aa13.21□□□□□ -0.3
DDX56-203ENST00000421223 ZDHHC9Q9Y397 364 aa13.21□□□□□ -0.3
DDX56-203ENST00000421223 LMO7Q8WWI1 1683 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 PCDH11XQ9BZA7 1347 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 PCDH11YQ9BZA8 1340 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 SKOR2Q2VWA4 1001 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms