RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CTCFLQ8NI51 663 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 COG6Q9Y2V7 657 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 JAG2Q9Y219 1238 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC93Q567U6 631 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC174Q6PII3 467 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC125Q86Z20 511 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 HINFPQ9BQA5 517 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 ADGRF5Q8IZF2 1346 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 DPF3Q92784 378 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 SPATA31A6Q5VVP1 1343 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 FOXD4L6Q3SYB3 417 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 SUPT20HL1Q3ZLR7 823 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 FOXD4L3Q6VB84 417 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 LRRCC1Q9C099 1032 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 BAG4O95429 457 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 LDHBP07195 334 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 MICALL1Q8N3F8 863 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 LRRC9Q6ZRR7 1453 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 GJD4Q96KN9 370 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 ZEB2O60315 1214 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 TSPY3P0CV98 308 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 TSPY8P0CW00 308 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 OSBPP22059 807 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 TTLL6Q8N841 843 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 TAOK3Q9H2K8 898 aa10.84□□□□□ -0.67
LIMCH1-202ENST00000381753 TRPM2O94759 1503 aa10.83□□□□□ -0.67
LIMCH1-202ENST00000381753 IMMTQ16891 758 aaKnown RBP10.83□□□□□ -0.67
LIMCH1-202ENST00000381753 PARP10Q53GL7 1025 aa10.83□□□□□ -0.67
LIMCH1-202ENST00000381753 ZNF354CQ86Y25 554 aa10.83□□□□□ -0.67
LIMCH1-202ENST00000381753 CAMSAP2Q08AD1 1489 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 IRS4O14654 1257 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 POTEJP0CG39 1038 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 BICD1Q96G01 975 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 NLRP5P59047 1200 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 TTF1Q15361 905 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 ZYXQ15942 572 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 ELMSAN1Q6PJG2 1045 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 ANKRD13DQ6ZTN6 518 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 DPP9Q86TI2 863 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 NOP56O00567 594 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 CCNA1P78396 465 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 PPIP5K1Q6PFW1 1433 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 APBB1IPQ7Z5R6 666 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 KAT14Q9H8E8 782 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 VPS37CA5D8V6 355 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 IREB2P48200 963 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 PIP4K2AP48426 406 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 ARHGEF10LQ9HCE6 1279 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 STK24Q9Y6E0 443 aa10.83□□□□□ -0.68
LIMCH1-202ENST00000381753 SP4Q02446 784 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 AKAP4Q5JQC9 854 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 UBE3BQ7Z3V4 1068 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 RNF41Q9H4P4 317 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 NSD3Q9BZ95 1437 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 KIAA1107Q9UPP5 1409 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 BECN2A8MW95 431 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 GBP4Q96PP9 640 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 UQCRFS1P1P0C7P4 283 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 DCTN1Q14203 1278 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 MTIF3Q9H2K0 278 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 PRDM5Q9NQX1 630 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 MAP3K2Q9Y2U5 619 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 NAA16Q6N069 864 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 BICD2Q8TD16 824 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 MAGEC2Q9UBF1 373 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 GINS2Q9Y248 185 aa10.82□□□□□ -0.68
LIMCH1-202ENST00000381753 ZBBXA8MT70 800 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 EXOSC9Q06265 439 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 STX8Q9UNK0 236 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 MICAL1Q8TDZ2 1067 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 JARID2Q92833 1246 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 PRC1O43663 620 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 ZBED4O75132 1171 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 RAET1EQ8TD07 263 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 MAP4K4O95819 1239 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 KMT5BQ4FZB7 885 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 PABPN1LA6NDY0 278 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 SMARCC2Q8TAQ2 1214 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 NAP1L5Q96NT1 182 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 UBA5Q9GZZ9 404 aa10.81□□□□□ -0.68
LIMCH1-202ENST00000381753 UQCRHLA0A096LP55 91 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 NR1I2O75469 434 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 UBXN2AP68543 259 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 BRD4O60885 1362 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 CYP7A1P22680 504 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 NBPF11Q86T75 865 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 SMC3Q9UQE7 1217 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 TOP2BQ02880 1626 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 GOLGA6L19H0YKK7 550 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 KIF4AO95239 1232 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 INTS3Q68E01 1043 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 DNAAF4Q8WXU2 420 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 SEPT11Q9NVA2 429 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 BACH1O14867 736 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 CDKL5O76039 1030 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 HOMER2Q9NSB8 354 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 CHMP5Q9NZZ3 219 aa10.8□□□□□ -0.68
LIMCH1-202ENST00000381753 ADRA2BP18089 450 aa10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 MSNP26038 577 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 RTKN2Q8IZC4 609 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms