RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 GCC1Q96CN9 775 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 AHDC1Q5TGY3 1603 aaPredicted RBP13.12□□□□□ -0.31
TPM3-212ENST00000368533 RPAP2Q8IXW5 612 aaPredicted RBP13.11□□□□□ -0.31
TPM3-212ENST00000368533 DCTPP1Q9H773 170 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 ANKRD13DQ6ZTN6 518 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 SIL1Q9H173 461 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 SPATA31A1Q5TZJ5 1347 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 SURF6O75683 361 aaKnown RBP13.11□□□□□ -0.31
TPM3-212ENST00000368533 IGKV5-2P06315 115 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 SMIM5Q71RC9 77 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 PTF1AQ7RTS3 328 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 CERKQ8TCT0 537 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 ATG3Q9NT62 314 aa13.11□□□□□ -0.31
TPM3-212ENST00000368533 SIPA1L3O60292 1781 aaPredicted RBP13.1□□□□□ -0.31
TPM3-212ENST00000368533 ERBB4Q15303 1308 aa13.1□□□□□ -0.31
TPM3-212ENST00000368533 GOLGA6L3A6NEY3 463 aa13.1□□□□□ -0.31
TPM3-212ENST00000368533 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
TPM3-212ENST00000368533 PARP4Q9UKK3 1724 aaKnown RBP13.1□□□□□ -0.31
TPM3-212ENST00000368533 DDX58O95786 925 aaKnown RBP13.1□□□□□ -0.31
TPM3-212ENST00000368533 MARCH10Q8NA82 808 aaPredicted RBP13.1□□□□□ -0.31
TPM3-212ENST00000368533 CCDC85AQ96PX6 553 aaPredicted RBP13.1□□□□□ -0.31
TPM3-212ENST00000368533 HMMRO75330 724 aa13.09□□□□□ -0.31
TPM3-212ENST00000368533 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
TPM3-212ENST00000368533 NUTM1Q86Y26 1132 aa13.09□□□□□ -0.31
TPM3-212ENST00000368533 CHMP3Q9Y3E7 222 aa13.09□□□□□ -0.31
TPM3-212ENST00000368533 MAP4K4O95819 1239 aaPredicted RBP13.08□□□□□ -0.31
TPM3-212ENST00000368533 UBE3BQ7Z3V4 1068 aa13.08□□□□□ -0.31
TPM3-212ENST00000368533 SUCLG2Q96I99 432 aa13.08□□□□□ -0.31
TPM3-212ENST00000368533 SLC4A9Q96Q91 983 aa13.08□□□□□ -0.31
TPM3-212ENST00000368533 FAM177BA6PVY3 158 aa13.08□□□□□ -0.32
TPM3-212ENST00000368533 NKX1-1Q15270 411 aaPredicted RBP13.08□□□□□ -0.32
TPM3-212ENST00000368533 SOS1Q07889 1333 aaPredicted RBP13.08□□□□□ -0.32
TPM3-212ENST00000368533 ATP8B2P98198 1209 aa13.08□□□□□ -0.32
TPM3-212ENST00000368533 NEXNQ0ZGT2 675 aa13.08□□□□□ -0.32
TPM3-212ENST00000368533 USP21Q9UK80 565 aa13.08□□□□□ -0.32
TPM3-212ENST00000368533 COL14A1Q05707 1796 aaKnown RBP13.07□□□□□ -0.32
TPM3-212ENST00000368533 PLEKHM2Q8IWE5 1019 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 HSCBQ8IWL3 235 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 BICC1Q9H694 974 aaKnown RBP13.07□□□□□ -0.32
TPM3-212ENST00000368533 ABCC6O95255 1503 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 SHANK3Q9BYB0 1731 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 GPTP24298 496 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 EPHA10Q5JZY3 1008 aa13.07□□□□□ -0.32
TPM3-212ENST00000368533 GRM8O00222 908 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 GSPT1P15170 499 aaKnown RBP13.06□□□□□ -0.32
TPM3-212ENST00000368533 LRP10Q7Z4F1 713 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 UNC5CLQ8IV45 518 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 TOGARAM1Q9Y4F4 1720 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 NEURL1BA8MQ27 555 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 SPATA31A5Q5VU36 1347 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 SPATA31A7Q8IWB4 1347 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 A0A087WZG4 1122 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 LINS1Q8NG48 757 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 TBC1D2BQ9UPU7 963 aa13.06□□□□□ -0.32
TPM3-212ENST00000368533 PLCH1Q4KWH8 1693 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 KAZALD1Q96I82 304 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 ADAMTS7Q9UKP4 1686 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 CACNA1FO60840 1977 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 SYNE4Q8N205 404 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 ZBTB1Q9Y2K1 713 aa13.05□□□□□ -0.32
TPM3-212ENST00000368533 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.05□□□□□ -0.32
TPM3-212ENST00000368533 METTL22Q9BUU2 404 aaPredicted RBP13.04□□□□□ -0.32
TPM3-212ENST00000368533 LRRCC1Q9C099 1032 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 DISP2A7MBM2 1401 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 GCKRQ14397 625 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 MRC1P22897 1456 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 ESPNB1AK53 854 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 CHMP4AQ9BY43 222 aa13.04□□□□□ -0.32
TPM3-212ENST00000368533 JCADQ9P266 1359 aa13.03□□□□□ -0.32
TPM3-212ENST00000368533 ATP6V1AP38606 617 aa13.03□□□□□ -0.32
TPM3-212ENST00000368533 RILPL2Q969X0 211 aa13.03□□□□□ -0.32
TPM3-212ENST00000368533 PRDM4Q9UKN5 801 aa13.03□□□□□ -0.32
TPM3-212ENST00000368533 TRIM6-TRIM34B2RNG4 842 aa13.02□□□□□ -0.32
TPM3-212ENST00000368533 ANTXR1Q9H6X2 564 aa13.02□□□□□ -0.32
TPM3-212ENST00000368533 LRP6O75581 1613 aa13.02□□□□□ -0.32
TPM3-212ENST00000368533 KCPQ6ZWJ8 1503 aa13.02□□□□□ -0.33
TPM3-212ENST00000368533 HLFQ16534 295 aa13.02□□□□□ -0.33
TPM3-212ENST00000368533 COL22A1Q8NFW1 1626 aaPredicted RBP13.02□□□□□ -0.33
TPM3-212ENST00000368533 TBC1D9Q6ZT07 1266 aa13.02□□□□□ -0.33
TPM3-212ENST00000368533 ALDH1L1O75891 902 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 PLBD2Q8NHP8 589 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 SSH3Q8TE77 659 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 CHMP5Q9NZZ3 219 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 FAM89AQ96GI7 184 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 AFF2P51816 1311 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 BCL9LQ86UU0 1499 aa13.01□□□□□ -0.33
TPM3-212ENST00000368533 BCL9O00512 1426 aa13□□□□□ -0.33
TPM3-212ENST00000368533 FSD2A1L4K1 749 aa13□□□□□ -0.33
TPM3-212ENST00000368533 STARD3NLO95772 234 aa13□□□□□ -0.33
TPM3-212ENST00000368533 SDSP20132 328 aa13□□□□□ -0.33
TPM3-212ENST00000368533 RHPN1Q8TCX5 695 aa13□□□□□ -0.33
TPM3-212ENST00000368533 ITGB4P16144 1822 aa13□□□□□ -0.33
TPM3-212ENST00000368533 TNS2Q63HR2 1409 aa13□□□□□ -0.33
TPM3-212ENST00000368533 PDE1AP54750 535 aa13□□□□□ -0.33
TPM3-212ENST00000368533 TTC22Q5TAA0 569 aa13□□□□□ -0.33
TPM3-212ENST00000368533 ZNF594Q96JF6 807 aaPredicted RBP12.99□□□□□ -0.33
TPM3-212ENST00000368533 CCDC8Q9H0W5 538 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms