RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 HMGN5P82970 282 aaKnown RBP12.69□□□□□ -0.38
CLIP1-203ENST00000361654 LRSAM1Q6UWE0 723 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 CKAP2LQ8IYA6 745 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 DDX11Q96FC9 970 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 KIF4AO95239 1232 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 ARHGAP29Q52LW3 1261 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 ERMNQ8TAM6 284 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 STK32BQ9NY57 414 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 NESP48681 1621 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 CCDC174Q6PII3 467 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 TRAK2O60296 914 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 SYCP3Q8IZU3 236 aa12.69□□□□□ -0.38
CLIP1-203ENST00000361654 STAMBPO95630 424 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 ZNF804AQ7Z570 1209 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 TOPBP1Q92547 1522 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 NAIPQ13075 1403 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 EIF3JO75822 258 aaKnown RBP12.68□□□□□ -0.38
CLIP1-203ENST00000361654 ALDH1L2Q3SY69 923 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 CENPHQ9H3R5 247 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 ZC3H12CQ9C0D7 883 aaKnown RBP12.68□□□□□ -0.38
CLIP1-203ENST00000361654 TNRQ92752 1358 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 CHRNA2Q15822 529 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 CCDC148Q8NFR7 591 aa12.68□□□□□ -0.38
CLIP1-203ENST00000361654 TPTE2Q6XPS3 522 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 LEKR1Q6ZMV7 388 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 BICD1Q96G01 975 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 RTCBQ9Y3I0 505 aaKnown RBP12.67□□□□□ -0.38
CLIP1-203ENST00000361654 TNNI2P48788 182 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-203ENST00000361654 FBXO31Q5XUX0 539 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-203ENST00000361654 VAT1LQ9HCJ6 419 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 PRPF40BQ6NWY9 871 aaKnown RBP12.67□□□□□ -0.38
CLIP1-203ENST00000361654 MFSD6Q6ZSS7 791 aa12.67□□□□□ -0.38
CLIP1-203ENST00000361654 FAM135AQ9P2D6 1515 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 GSTTP1A0A1W2PQM5 241 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 STX6O43752 255 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 LRRC59Q96AG4 307 aaKnown RBP12.66□□□□□ -0.38
CLIP1-203ENST00000361654 TBCAO75347 108 aaKnown RBP12.66□□□□□ -0.38
CLIP1-203ENST00000361654 KIAA0754O94854 1291 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 CFAP100Q494V2 611 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 SPC24Q8NBT2 197 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 CCDC8Q9H0W5 538 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-203ENST00000361654 WDR70Q9NW82 654 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 IDI1Q13907 227 aa12.66□□□□□ -0.38
CLIP1-203ENST00000361654 MTERF4Q7Z6M4 381 aaKnown RBP12.66□□□□□ -0.38
CLIP1-203ENST00000361654 CCDC82Q8N4S0 544 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 NBPF7P0C2Y1 421 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-203ENST00000361654 ACSBG1Q96GR2 724 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 VEZTQ9HBM0 779 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 PLCG2P16885 1265 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 CTNNBL1Q8WYA6 563 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-203ENST00000361654 ACTN2P35609 894 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 GNAQP50148 359 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 PODXL2Q9NZ53 605 aa12.65□□□□□ -0.38
CLIP1-203ENST00000361654 TAF12Q16514 161 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TMEM67Q5HYA8 995 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 SCAND2PQ9GZW5 306 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TRMT1LQ7Z2T5 733 aaKnown RBP12.64□□□□□ -0.39
CLIP1-203ENST00000361654 MAP3K2Q9Y2U5 619 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 PTPRCP08575 1304 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 MACROD2A1Z1Q3 448 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TSPY3P0CV98 308 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TSPY8P0CW00 308 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 IDEP14735 1019 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 UBA7P41226 1012 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 CCDC40Q4G0X9 1142 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TCERG1LQ5VWI1 586 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 IARSP41252 1262 aaKnown RBP12.64□□□□□ -0.39
CLIP1-203ENST00000361654 EVI5LQ96CN4 794 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 TEX14Q8IWB6 1497 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 USO1O60763 962 aaKnown RBP12.64□□□□□ -0.39
CLIP1-203ENST00000361654 CCDC172P0C7W6 258 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 RFX1P22670 979 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 STX8Q9UNK0 236 aa12.64□□□□□ -0.39
CLIP1-203ENST00000361654 MAGI1Q96QZ7 1491 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 BRDTQ58F21 947 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 CCDC117Q8IWD4 279 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 FAM114A1Q8IWE2 563 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 FAM177A1Q8N128 213 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 TMEM57Q8N5G2 664 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 PUF60Q9UHX1 559 aaKnown RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 EMILIN1Q9Y6C2 1016 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 USP8P40818 1118 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 MAP3K11Q16584 847 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 GIGYF2Q6Y7W6 1299 aaKnown RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 ANKRD13DQ6ZTN6 518 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 UBE3BQ7Z3V4 1068 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 LMTK3Q96Q04 1460 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 CC2D2AQ9P2K1 1620 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 RRP9O43818 475 aaKnown RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 APBB1IPQ7Z5R6 666 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 THUMPD2Q9BTF0 503 aaKnown RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 TAOK3Q9H2K8 898 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 NIP7Q9Y221 180 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 ATP5J2-PTCD1G3V325 749 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 PRC1O43663 620 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 RBM26Q5T8P6 1007 aaKnown RBP12.63□□□□□ -0.39
CLIP1-203ENST00000361654 KLHL10Q6JEL2 608 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 TSNARE1Q96NA8 513 aa12.63□□□□□ -0.39
CLIP1-203ENST00000361654 POLA1P09884 1462 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms