RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 STXBP4Q6ZWJ1 553 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 ANKIB1Q9P2G1 1089 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 NSD3Q9BZ95 1437 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 TCERG1LQ5VWI1 586 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 EHBP1Q8NDI1 1231 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 CCDC12Q8WUD4 166 aaPredicted RBP17.13■□□□□ 0.33
LMX1B-201ENST00000355497 GJB2P29033 226 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 BMS1Q14692 1282 aaKnown RBP17.13■□□□□ 0.33
LMX1B-201ENST00000355497 TCP11L1Q9NUJ3 509 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 SPTY2D1Q68D10 685 aaPredicted RBP17.13■□□□□ 0.33
LMX1B-201ENST00000355497 FERMT1Q9BQL6 677 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 JADE2Q9NQC1 790 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 CEP135Q66GS9 1140 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 BIN1O00499 593 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 PRC1O43663 620 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 CCT2P78371 535 aaKnown RBP17.12■□□□□ 0.33
LMX1B-201ENST00000355497 IFI16Q16666 785 aaKnown RBP17.12■□□□□ 0.33
LMX1B-201ENST00000355497 KANK3Q6NY19 840 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 PABPN1LA6NDY0 278 aaKnown RBP17.12■□□□□ 0.33
LMX1B-201ENST00000355497 IFIT5Q13325 482 aaKnown RBP17.12■□□□□ 0.33
LMX1B-201ENST00000355497 SLF2Q8IX21 1173 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 DDX12PQ92771 950 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 MCM10Q7L590 875 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 CFAP57Q96MR6 1250 aa17.12■□□□□ 0.33
LMX1B-201ENST00000355497 IPO4Q8TEX9 1081 aaKnown RBP17.11■□□□□ 0.33
LMX1B-201ENST00000355497 PUS7Q96PZ0 661 aaKnown RBP17.11■□□□□ 0.33
LMX1B-201ENST00000355497 IKBKGQ9Y6K9 419 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 TTC21AQ8NDW8 1320 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 ZPR1O75312 459 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 CCDC8Q9H0W5 538 aaPredicted RBP17.11■□□□□ 0.33
LMX1B-201ENST00000355497 C9orf84Q5VXU9 1444 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 PPP1R14CQ8TAE6 165 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 PAXBP1Q9Y5B6 917 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 TMOD3Q9NYL9 352 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 UVSSAQ2YD98 709 aa17.11■□□□□ 0.33
LMX1B-201ENST00000355497 RPGRIP1LQ68CZ1 1315 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 NBPF8Q3BBV2 869 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 SYNJ2O15056 1496 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 LRRC27Q9C0I9 530 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 CCDC155Q8N6L0 562 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 KCNH5Q8NCM2 988 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 SMARCA4P51532 1647 aa17.1■□□□□ 0.33
LMX1B-201ENST00000355497 CKAP4Q07065 602 aaKnown RBP17.09■□□□□ 0.33
LMX1B-201ENST00000355497 EVI5LQ96CN4 794 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 PLEKHH2Q8IVE3 1493 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 RAD54L2Q9Y4B4 1467 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 STX6O43752 255 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 SYCP3Q8IZU3 236 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 WDHD1O75717 1129 aaPredicted RBP17.09■□□□□ 0.33
LMX1B-201ENST00000355497 IDEP14735 1019 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 ACTN2P35609 894 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 SLC52A1Q9NWF4 448 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 KIF5BP33176 963 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 KIAA0753Q2KHM9 967 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 SREK1Q8WXA9 508 aaKnown RBP17.09■□□□□ 0.33
LMX1B-201ENST00000355497 FBF1Q8TES7 1133 aa17.09■□□□□ 0.33
LMX1B-201ENST00000355497 A0A1W2PRG0 241 aa17.08■□□□□ 0.33
LMX1B-201ENST00000355497 GOLIM4O00461 696 aa17.08■□□□□ 0.33
LMX1B-201ENST00000355497 IARSP41252 1262 aaKnown RBP17.08■□□□□ 0.33
LMX1B-201ENST00000355497 GNG11P61952 73 aa17.08■□□□□ 0.33
LMX1B-201ENST00000355497 MYO1BO43795 1136 aa17.08■□□□□ 0.33
LMX1B-201ENST00000355497 RBM25P49756 843 aaKnown RBP17.08■□□□□ 0.33
LMX1B-201ENST00000355497 NSRP1Q9H0G5 558 aaKnown RBP17.08■□□□□ 0.33
LMX1B-201ENST00000355497 TAF7Q15545 349 aaPredicted RBP17.08■□□□□ 0.32
LMX1B-201ENST00000355497 ERICH3Q5RHP9 1530 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 ABCC11Q96J66 1382 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 PUF60Q9UHX1 559 aaKnown RBP17.08■□□□□ 0.32
LMX1B-201ENST00000355497 NKTRP30414 1462 aaKnown RBP17.08■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC171Q6TFL3 1326 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC172P0C7W6 258 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 PSMD1Q99460 953 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 HSPA4P34932 840 aa17.08■□□□□ 0.32
LMX1B-201ENST00000355497 RARSP54136 660 aaKnown RBP17.07■□□□□ 0.32
LMX1B-201ENST00000355497 TBC1D2Q9BYX2 928 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 USP16Q9Y5T5 823 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 CFTRP13569 1480 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 CAVIN2O95810 425 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 TMEM67Q5HYA8 995 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 RMND1Q9NWS8 449 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 TFIP11Q9UBB9 837 aaKnown RBP17.07■□□□□ 0.32
LMX1B-201ENST00000355497 SPDYE4A6NLX3 237 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 TTF1Q15361 905 aaPredicted RBP17.07■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC102BQ68D86 513 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 THUMPD2Q9BTF0 503 aaKnown RBP17.07■□□□□ 0.32
LMX1B-201ENST00000355497 PRIMPOLQ96LW4 560 aa17.07■□□□□ 0.32
LMX1B-201ENST00000355497 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.07■□□□□ 0.32
LMX1B-201ENST00000355497 DYNC1I1O14576 645 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 ZNF165P49910 485 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 SSH1Q8WYL5 1049 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 DRC1Q96MC2 740 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 EXOC1Q9NV70 894 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 DNAAF4Q8WXU2 420 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 SERPINA10Q9UK55 444 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 SSX2IPQ9Y2D8 614 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 TBC1D5Q92609 795 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 GDPD2Q9HCC8 539 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 PTCD1O75127 700 aaKnown RBP17.06■□□□□ 0.32
LMX1B-201ENST00000355497 ZC3H6P61129 1189 aaKnown RBP17.06■□□□□ 0.32
LMX1B-201ENST00000355497 UBE2HP62256 183 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 TMEM87AQ8NBN3 555 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms