RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 NHSL1Q5SYE7 1610 aa22.79■■□□□ 1.24
PSPC1-201ENST00000338910 RBM27Q9P2N5 1060 aaKnown RBP22.79■■□□□ 1.24
PSPC1-201ENST00000338910 HEG1Q9ULI3 1381 aa22.79■■□□□ 1.24
PSPC1-201ENST00000338910 COL5A2P05997 1499 aaPredicted RBP22.78■■□□□ 1.24
PSPC1-201ENST00000338910 BEND3Q5T5X7 828 aa22.78■■□□□ 1.24
PSPC1-201ENST00000338910 ZDHHC9Q9Y397 364 aa22.78■■□□□ 1.24
PSPC1-201ENST00000338910 ZNF790Q6PG37 636 aa22.78■■□□□ 1.24
PSPC1-201ENST00000338910 LRSAM1Q6UWE0 723 aa22.78■■□□□ 1.24
PSPC1-201ENST00000338910 STRN4Q9NRL3 753 aa22.78■■□□□ 1.24
PSPC1-201ENST00000338910 SCN11AQ9UI33 1791 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 DYNC1I1O14576 645 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 NBPF7P0C2Y1 421 aaPredicted RBP22.77■■□□□ 1.24
PSPC1-201ENST00000338910 SDSP20132 328 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 DCAF5Q96JK2 942 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 PXDNLA1KZ92 1463 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 ABCA3Q99758 1704 aa22.77■■□□□ 1.24
PSPC1-201ENST00000338910 ZGPATQ8N5A5 531 aaKnown RBP22.77■■□□□ 1.24
PSPC1-201ENST00000338910 LRRCC1Q9C099 1032 aa22.76■■□□□ 1.23
PSPC1-201ENST00000338910 TMEM63CQ9P1W3 806 aa22.76■■□□□ 1.23
PSPC1-201ENST00000338910 MTERF4Q7Z6M4 381 aaKnown RBP22.75■■□□□ 1.23
PSPC1-201ENST00000338910 ADCY9O60503 1353 aa22.75■■□□□ 1.23
PSPC1-201ENST00000338910 PDE1AP54750 535 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 LARP1Q6PKG0 1096 aaKnown RBP22.74■■□□□ 1.23
PSPC1-201ENST00000338910 CCDC39Q9UFE4 941 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 MAP3K2Q9Y2U5 619 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 EVA1CP58658 441 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 TSHZ3Q63HK5 1081 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 PPP1R42Q7Z4L9 355 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 PLEKHG2Q9H7P9 1386 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 PKD1L3Q7Z443 1732 aa22.74■■□□□ 1.23
PSPC1-201ENST00000338910 ST18O60284 1047 aa22.73■■□□□ 1.23
PSPC1-201ENST00000338910 SYCE3A1L190 88 aa22.72■■□□□ 1.23
PSPC1-201ENST00000338910 AIMP1Q12904 312 aaKnown RBP22.72■■□□□ 1.23
PSPC1-201ENST00000338910 SASS6Q6UVJ0 657 aa22.72■■□□□ 1.23
PSPC1-201ENST00000338910 ZCRB1Q8TBF4 217 aaKnown RBP22.72■■□□□ 1.23
PSPC1-201ENST00000338910 CARD10Q9BWT7 1032 aa22.72■■□□□ 1.23
PSPC1-201ENST00000338910 SSH3Q8TE77 659 aa22.71■■□□□ 1.23
PSPC1-201ENST00000338910 NSFL1CQ9UNZ2 370 aaKnown RBP22.71■■□□□ 1.23
PSPC1-201ENST00000338910 KSR2Q6VAB6 950 aa22.71■■□□□ 1.23
PSPC1-201ENST00000338910 ZNF496Q96IT1 587 aaPredicted RBP22.71■■□□□ 1.23
PSPC1-201ENST00000338910 OSBPL3Q9H4L5 887 aa22.71■■□□□ 1.23
PSPC1-201ENST00000338910 HYPKQ9NX55 129 aa22.71■■□□□ 1.23
PSPC1-201ENST00000338910 SRGAP3O43295 1099 aa22.7■■□□□ 1.22
PSPC1-201ENST00000338910 SURF6O75683 361 aaKnown RBP22.7■■□□□ 1.22
PSPC1-201ENST00000338910 CABP4P57796 275 aa22.7■■□□□ 1.22
PSPC1-201ENST00000338910 IL2RBP14784 551 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 CHAMP1Q96JM3 812 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 IL1RAPL2Q9NP60 686 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 ROBO1Q9Y6N7 1651 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 CWF19L2Q2TBE0 894 aaKnown RBP22.69■■□□□ 1.22
PSPC1-201ENST00000338910 DDX21Q9NR30 783 aaKnown RBP eCLIP22.69■■□□□ 1.22
PSPC1-201ENST00000338910 PCDH11XQ9BZA7 1347 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 PCDH11YQ9BZA8 1340 aa22.69■■□□□ 1.22
PSPC1-201ENST00000338910 MX1P20591 662 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 PDIA6Q15084 440 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 SMAP1Q8IYB5 467 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-201ENST00000338910 TTC5Q8N0Z6 440 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 C9orf78Q9NZ63 289 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-201ENST00000338910 MBD3O95983 291 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 MYL6BP14649 208 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 CASC1Q6TDU7 716 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 BTG4Q9NY30 223 aa22.68■■□□□ 1.22
PSPC1-201ENST00000338910 N4BP2Q86UW6 1770 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-201ENST00000338910 POLA2Q14181 598 aa22.67■■□□□ 1.22
PSPC1-201ENST00000338910 MRC1P22897 1456 aa22.67■■□□□ 1.22
PSPC1-201ENST00000338910 PARP4Q9UKK3 1724 aaKnown RBP22.67■■□□□ 1.22
PSPC1-201ENST00000338910 DDX54Q8TDD1 881 aaKnown RBP22.67■■□□□ 1.22
PSPC1-201ENST00000338910 SALL3Q9BXA9 1300 aa22.67■■□□□ 1.22
PSPC1-201ENST00000338910 REC8O95072 547 aa22.65■■□□□ 1.22
PSPC1-201ENST00000338910 USP16Q9Y5T5 823 aa22.65■■□□□ 1.22
PSPC1-201ENST00000338910 C5P01031 1676 aa22.64■■□□□ 1.21
PSPC1-201ENST00000338910 ALDH1L1O75891 902 aa22.64■■□□□ 1.21
PSPC1-201ENST00000338910 DDX58O95786 925 aaKnown RBP22.64■■□□□ 1.21
PSPC1-201ENST00000338910 NUTM1Q86Y26 1132 aa22.64■■□□□ 1.21
PSPC1-201ENST00000338910 RNF214Q8ND24 703 aa22.64■■□□□ 1.21
PSPC1-201ENST00000338910 PIP4K2AP48426 406 aaPredicted RBP22.63■■□□□ 1.21
PSPC1-201ENST00000338910 LTBP4Q8N2S1 1624 aa22.63■■□□□ 1.21
PSPC1-201ENST00000338910 SNRPA1P09661 255 aaKnown RBP22.63■■□□□ 1.21
PSPC1-201ENST00000338910 RIC3Q7Z5B4 369 aa22.63■■□□□ 1.21
PSPC1-201ENST00000338910 RHPN1Q8TCX5 695 aa22.63■■□□□ 1.21
PSPC1-201ENST00000338910 FMNL2Q96PY5 1086 aa22.63■■□□□ 1.21
PSPC1-201ENST00000338910 RAB11FIP3O75154 756 aa22.62■■□□□ 1.21
PSPC1-201ENST00000338910 TRIM6-TRIM34B2RNG4 842 aa22.62■■□□□ 1.21
PSPC1-201ENST00000338910 LINS1Q8NG48 757 aa22.62■■□□□ 1.21
PSPC1-201ENST00000338910 RILPL2Q969X0 211 aa22.62■■□□□ 1.21
PSPC1-201ENST00000338910 COPS6Q7L5N1 327 aa22.61■■□□□ 1.21
PSPC1-201ENST00000338910 XAGE3Q8WTP9 111 aa22.61■■□□□ 1.21
PSPC1-201ENST00000338910 KIAA2012Q0VF49 1180 aa22.61■■□□□ 1.21
PSPC1-201ENST00000338910 STAP2Q9UGK3 403 aa22.61■■□□□ 1.21
PSPC1-201ENST00000338910 BRD1O95696 1058 aa22.6■■□□□ 1.21
PSPC1-201ENST00000338910 TSPY26PQ9H489 355 aa22.6■■□□□ 1.21
PSPC1-201ENST00000338910 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.6■■□□□ 1.21
PSPC1-201ENST00000338910 ERC2O15083 957 aa22.6■■□□□ 1.21
PSPC1-201ENST00000338910 NKX1-1Q15270 411 aaPredicted RBP22.6■■□□□ 1.21
PSPC1-201ENST00000338910 FOXD4L5Q5VV16 416 aaPredicted RBP22.59■■□□□ 1.21
PSPC1-201ENST00000338910 FOXD4L4Q8WXT5 416 aaPredicted RBP22.59■■□□□ 1.21
PSPC1-201ENST00000338910 KIF1BPQ96EK5 621 aa22.59■■□□□ 1.21
PSPC1-201ENST00000338910 TMX3Q96JJ7 454 aa22.59■■□□□ 1.21
PSPC1-201ENST00000338910 ERVV-2B6SEH9 535 aa22.59■■□□□ 1.21
PSPC1-201ENST00000338910 MYRIPQ8NFW9 859 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms