RNA–Protein interactions for RNA: ENST00000334859.8

LRCH3-201, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LRCH3, Length 2,258 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-201ENST00000334859 NPHP3Q7Z494 1330 aa21.44■■□□□ 1.02
LRCH3-201ENST00000334859 DDX17Q92841 729 aaKnown RBP21.44■■□□□ 1.02
LRCH3-201ENST00000334859 LMTK3Q96Q04 1460 aa21.44■■□□□ 1.02
LRCH3-201ENST00000334859 SPG7Q9UQ90 795 aa21.44■■□□□ 1.02
LRCH3-201ENST00000334859 ATF3P18847 181 aa21.43■■□□□ 1.02
LRCH3-201ENST00000334859 ZSCAN23Q3MJ62 389 aa21.43■■□□□ 1.02
LRCH3-201ENST00000334859 SUCLG2Q96I99 432 aa21.43■■□□□ 1.02
LRCH3-201ENST00000334859 LSG1Q9H089 658 aaKnown RBP21.43■■□□□ 1.02
LRCH3-201ENST00000334859 ECHDC1Q9NTX5 307 aa21.43■■□□□ 1.02
LRCH3-201ENST00000334859 KDM6AO15550 1401 aaPredicted RBP21.43■■□□□ 1.02
LRCH3-201ENST00000334859 BICC1Q9H694 974 aaKnown RBP21.43■■□□□ 1.02
LRCH3-201ENST00000334859 SLC52A2Q9HAB3 445 aa21.43■■□□□ 1.02
LRCH3-201ENST00000334859 CSB-PGBD3P0DP91 1061 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 MYL6BP14649 208 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 TATP17735 454 aaPredicted RBP21.42■■□□□ 1.02
LRCH3-201ENST00000334859 NASPP49321 788 aaPredicted RBP21.42■■□□□ 1.02
LRCH3-201ENST00000334859 RIC3Q7Z5B4 369 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 AACSQ86V21 672 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 SNX14Q9Y5W7 946 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 C5P01031 1676 aa21.42■■□□□ 1.02
LRCH3-201ENST00000334859 BRD1O95696 1058 aa21.41■■□□□ 1.02
LRCH3-201ENST00000334859 GPT2Q8TD30 523 aa21.41■■□□□ 1.02
LRCH3-201ENST00000334859 PDIA6Q15084 440 aa21.41■■□□□ 1.02
LRCH3-201ENST00000334859 MST1RQ04912 1400 aa21.41■■□□□ 1.02
LRCH3-201ENST00000334859 SCN11AQ9UI33 1791 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 MEGF6O75095 1541 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 NFATC2IPQ8NCF5 419 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 TRIM44Q96DX7 344 aaPredicted RBP21.4■■□□□ 1.02
LRCH3-201ENST00000334859 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.4■■□□□ 1.02
LRCH3-201ENST00000334859 PHKG2P15735 406 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 ZNF445P59923 1031 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 RUFY2Q8WXA3 655 aa21.4■■□□□ 1.02
LRCH3-201ENST00000334859 NEXNQ0ZGT2 675 aa21.39■■□□□ 1.02
LRCH3-201ENST00000334859 KAZALD1Q96I82 304 aa21.39■■□□□ 1.02
LRCH3-201ENST00000334859 RBM27Q9P2N5 1060 aaKnown RBP21.39■■□□□ 1.02
LRCH3-201ENST00000334859 G3BP1Q13283 466 aaKnown RBP eCLIP21.39■■□□□ 1.01
LRCH3-201ENST00000334859 RASEFQ8IZ41 740 aa21.39■■□□□ 1.01
LRCH3-201ENST00000334859 CABLES1Q8TDN4 633 aa21.39■■□□□ 1.01
LRCH3-201ENST00000334859 UTYO14607 1347 aa21.38■■□□□ 1.01
LRCH3-201ENST00000334859 IGKV5-2P06315 115 aa21.38■■□□□ 1.01
LRCH3-201ENST00000334859 LARP1Q6PKG0 1096 aaKnown RBP21.38■■□□□ 1.01
LRCH3-201ENST00000334859 ANP32BQ92688 251 aaKnown RBP21.38■■□□□ 1.01
LRCH3-201ENST00000334859 SIL1Q9H173 461 aa21.38■■□□□ 1.01
LRCH3-201ENST00000334859 TMEM94Q12767 1356 aa21.38■■□□□ 1.01
LRCH3-201ENST00000334859 XAGE3Q8WTP9 111 aa21.38■■□□□ 1.01
LRCH3-201ENST00000334859 ZNF496Q96IT1 587 aaPredicted RBP21.37■■□□□ 1.01
LRCH3-201ENST00000334859 CHRNA2Q15822 529 aa21.36■■□□□ 1.01
LRCH3-201ENST00000334859 IFNL2Q8IZJ0 200 aa21.36■■□□□ 1.01
LRCH3-201ENST00000334859 ANO8Q9HCE9 1232 aaPredicted RBP21.36■■□□□ 1.01
LRCH3-201ENST00000334859 FOXD4L6Q3SYB3 417 aaPredicted RBP21.36■■□□□ 1.01
LRCH3-201ENST00000334859 FOXD4L3Q6VB84 417 aaPredicted RBP21.36■■□□□ 1.01
LRCH3-201ENST00000334859 TTC5Q8N0Z6 440 aa21.36■■□□□ 1.01
LRCH3-201ENST00000334859 EVI5LQ96CN4 794 aa21.36■■□□□ 1.01
LRCH3-201ENST00000334859 SASH1O94885 1247 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 CASTP20810 708 aaKnown RBP21.35■■□□□ 1.01
LRCH3-201ENST00000334859 AK2P54819 239 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 COPS6Q7L5N1 327 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 TTC14Q96N46 770 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 MYD88Q99836 296 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 NEURL1BA8MQ27 555 aa21.35■■□□□ 1.01
LRCH3-201ENST00000334859 EAF2Q96CJ1 260 aaPredicted RBP21.35■■□□□ 1.01
LRCH3-201ENST00000334859 LARP6Q9BRS8 491 aaKnown RBP21.35■■□□□ 1.01
LRCH3-201ENST00000334859 CCDC8Q9H0W5 538 aaPredicted RBP21.35■■□□□ 1.01
LRCH3-201ENST00000334859 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.35■■□□□ 1.01
LRCH3-201ENST00000334859 MBD3O95983 291 aa21.34■■□□□ 1.01
LRCH3-201ENST00000334859 PTH1RQ03431 593 aa21.34■■□□□ 1.01
LRCH3-201ENST00000334859 CCDC173Q0VFZ6 552 aa21.34■■□□□ 1.01
LRCH3-201ENST00000334859 WDR33Q9C0J8 1336 aaKnown RBP21.34■■□□□ 1.01
LRCH3-201ENST00000334859 PIP4K2AP48426 406 aaPredicted RBP21.34■■□□□ 1.01
LRCH3-201ENST00000334859 KLHDC4Q8TBB5 520 aa21.34■■□□□ 1.01
LRCH3-201ENST00000334859 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.34■■□□□ 1.013e-7■□□□□ 10.5
LRCH3-201ENST00000334859 NSFL1CQ9UNZ2 370 aaKnown RBP21.34■■□□□ 1.01
LRCH3-201ENST00000334859 CPA1P15085 419 aa21.33■■□□□ 1.01
LRCH3-201ENST00000334859 GCKRQ14397 625 aa21.33■■□□□ 1.01
LRCH3-201ENST00000334859 PRPF40BQ6NWY9 871 aaKnown RBP21.33■■□□□ 1.01
LRCH3-201ENST00000334859 TLR7Q9NYK1 1049 aaKnown RBP21.33■■□□□ 1.01
LRCH3-201ENST00000334859 TMEM63CQ9P1W3 806 aa21.33■■□□□ 1.01
LRCH3-201ENST00000334859 ESPNB1AK53 854 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 RUFY3Q7L099 469 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 LIMCH1Q9UPQ0 1083 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 COL18A1P39060 1754 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 PRIM1P49642 420 aaKnown RBP21.32■■□□□ 1
LRCH3-201ENST00000334859 DCAF5Q96JK2 942 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 JAKMIP1Q96N16 626 aaKnown RBP21.32■■□□□ 1
LRCH3-201ENST00000334859 METTL22Q9BUU2 404 aaPredicted RBP21.32■■□□□ 1
LRCH3-201ENST00000334859 TNS3Q68CZ2 1445 aa21.32■■□□□ 1
LRCH3-201ENST00000334859 CYP27B1O15528 508 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 SNRPA1P09661 255 aaKnown RBP21.31■■□□□ 1
LRCH3-201ENST00000334859 CLCN1P35523 988 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 SYCE3A1L190 88 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 KCNJ4P48050 445 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 ANKRD13DQ6ZTN6 518 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 USP16Q9Y5T5 823 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 ERBB4Q15303 1308 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 CCDC171Q6TFL3 1326 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 DCCP43146 1447 aa21.31■■□□□ 1
LRCH3-201ENST00000334859 FAM227BQ96M60 508 aa21.3■■□□□ 1
LRCH3-201ENST00000334859 RPAP1Q9BWH6 1393 aaPredicted RBP21.3■■□□□ 1
LRCH3-201ENST00000334859 EPHA10Q5JZY3 1008 aa21.3■■□□□ 1
LRCH3-201ENST00000334859 JARID2Q92833 1246 aaPredicted RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms