RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 C11orf95C9JLR9 678 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-201ENST00000326004 LCE2BO14633 110 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 TNFRSF10BO14763 440 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 LBRQ14739 615 aaKnown RBP5.99□□□□□ -1.45
HMGB1-201ENST00000326004 ARSJQ5FYB0 599 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-201ENST00000326004 TMCO4Q5TGY1 634 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 IER5Q5VY09 327 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 ALKBH2Q6NS38 261 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 PGBD3Q8N328 593 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 ZIC5Q96T25 663 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 GAS2L1Q99501 681 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-201ENST00000326004 NEUROD4Q9HD90 331 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 TGFBR3LH3BV60 316 aa5.98□□□□□ -1.45
HMGB1-201ENST00000326004 NLRP8Q86W28 1048 aa5.98□□□□□ -1.45
HMGB1-201ENST00000326004 IFT43Q96FT9 208 aa5.98□□□□□ -1.45
HMGB1-201ENST00000326004 ANO2Q9NQ90 1003 aa5.98□□□□□ -1.45
HMGB1-201ENST00000326004 PODXL2Q9NZ53 605 aa5.98□□□□□ -1.45
HMGB1-201ENST00000326004 A0A1W2PNR3 127 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 H7C1W4 665 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 SNRPBP14678 240 aaKnown RBP5.97□□□□□ -1.45
HMGB1-201ENST00000326004 MPSTP25325 297 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 MTMR3Q13615 1198 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 NOM1Q5C9Z4 860 aaKnown RBP5.97□□□□□ -1.45
HMGB1-201ENST00000326004 EFHC2Q5JST6 749 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 CCDC155Q8N6L0 562 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 GMCL1Q96IK5 515 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 SUSD3Q96L08 255 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 GPAMQ9HCL2 828 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 KLK14Q9P0G3 267 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 BIN2Q9UBW5 565 aaPredicted RBP5.97□□□□□ -1.45
HMGB1-201ENST00000326004 GJA3Q9Y6H8 435 aa5.97□□□□□ -1.45
HMGB1-201ENST00000326004 CCDC27Q2M243 656 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 SAMD5Q5TGI4 173 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 FIGNL1Q6PIW4 674 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 RIPOR1Q6ZS17 1223 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 RUBCNLQ9H714 662 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 FAM13BQ9NYF5 915 aa5.96□□□□□ -1.46
HMGB1-201ENST00000326004 CCDC9Q9Y3X0 531 aaKnown RBP5.96□□□□□ -1.46
HMGB1-201ENST00000326004 EIF1AXP47813 144 aaKnown RBP5.95□□□□□ -1.46
HMGB1-201ENST00000326004 ARHGAP4P98171 946 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 ECM1Q16610 540 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 LRRC69Q6ZNQ3 347 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 TREML1Q86YW5 311 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 ETFBKMTQ8IXQ9 262 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 TRIM22Q8IYM9 498 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 ZNF280CQ8ND82 737 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 HSH2DQ96JZ2 352 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 NUCKS1Q9H1E3 243 aaKnown RBP5.95□□□□□ -1.46
HMGB1-201ENST00000326004 BCS1LQ9Y276 419 aa5.95□□□□□ -1.46
HMGB1-201ENST00000326004 MICAL2O94851 1124 aa5.94□□□□□ -1.46
HMGB1-201ENST00000326004 ITGA6P23229 1130 aa5.94□□□□□ -1.46
HMGB1-201ENST00000326004 ZAP70P43403 619 aa5.94□□□□□ -1.46
HMGB1-201ENST00000326004 BTLAQ7Z6A9 289 aa5.94□□□□□ -1.46
HMGB1-201ENST00000326004 DMGDHQ9UI17 866 aaKnown RBP5.94□□□□□ -1.46
HMGB1-201ENST00000326004 DCTN4Q9UJW0 460 aa5.94□□□□□ -1.46
HMGB1-201ENST00000326004 NDUFB5O43674 189 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 FAM157BP0CG42 384 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 EPB42P16452 691 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 IDH3AP50213 366 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 ARSDP51689 593 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 MFAP1P55081 439 aaKnown RBP5.93□□□□□ -1.46
HMGB1-201ENST00000326004 AAMPQ13685 434 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 CITED4Q96RK1 184 aa5.93□□□□□ -1.46
HMGB1-201ENST00000326004 ZBTB39O15060 712 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 ATXN7O15265 892 aaPredicted RBP5.92□□□□□ -1.46
HMGB1-201ENST00000326004 PPFIA3O75145 1194 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 RPLP1P05386 114 aaKnown RBP5.92□□□□□ -1.46
HMGB1-201ENST00000326004 PCSK2P16519 638 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 MZF1P28698 734 aaPredicted RBP5.92□□□□□ -1.46
HMGB1-201ENST00000326004 USP5P45974 858 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 TYRO3Q06418 890 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 DBN1Q16643 649 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 FAM26DQ5JW98 314 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 NPAS3Q8IXF0 933 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 KLRG1Q96E93 195 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 ZNF837Q96EG3 531 aaPredicted RBP5.92□□□□□ -1.46
HMGB1-201ENST00000326004 CEP63Q96MT8 703 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 ZCCHC2Q9C0B9 1178 aaKnown RBP5.92□□□□□ -1.46
HMGB1-201ENST00000326004 BRPF3Q9ULD4 1205 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 PCDHGC4Q9Y5F7 938 aa5.92□□□□□ -1.46
HMGB1-201ENST00000326004 POTECB2RU33 542 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 FZD6O60353 706 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 THBS1P07996 1170 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 ERCC3P19447 782 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 INPP5BP32019 993 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 MARSP56192 900 aaKnown RBP5.91□□□□□ -1.46
HMGB1-201ENST00000326004 LAMC2Q13753 1193 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 UBAP2LQ14157 1087 aaKnown RBP5.91□□□□□ -1.46
HMGB1-201ENST00000326004 NANOS1Q8WY41 292 aaKnown RBP5.91□□□□□ -1.46
HMGB1-201ENST00000326004 PIK3R5Q8WYR1 880 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 RBCK1Q9BYM8 510 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 C11orf16Q9NQ32 467 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 PHF24Q9UPV7 400 aa5.91□□□□□ -1.46
HMGB1-201ENST00000326004 OPLAHO14841 1288 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 EFSO43281 561 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 MAPK1P28482 360 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 KCNQ4P56696 695 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 PDE3BQ13370 1112 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 FOXR1Q6PIV2 292 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 ATCAYQ86WG3 371 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms