RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 PTH1RQ03431 593 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 SLC39A6Q13433 755 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 PROSER3Q2NL68 480 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 BCL11BQ9C0K0 894 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 STAP2Q9UGK3 403 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 NOL7Q9UMY1 257 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 PPFIA3O75145 1194 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 EIF4A1P60842 406 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 LARGE1O95461 756 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 ADCK5Q3MIX3 580 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 LARP1BQ659C4 914 aaKnown RBP15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 ADAMTS13Q76LX8 1427 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 DBF4Q9UBU7 674 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 CEP170BQ9Y4F5 1589 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 RUFY3Q7L099 469 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 PI4K2BQ8TCG2 481 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 FAM227BQ96M60 508 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 DNAJC2Q99543 621 aaKnown RBP15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 NLRP2Q9NX02 1062 aa15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 ZNF330Q9Y3S2 320 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-201ENST00000325110 CEBPZQ03701 1054 aaKnown RBP15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 CCDC183Q5T5S1 534 aa15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 TFIP11Q9UBB9 837 aaKnown RBP15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 TBX22Q9Y458 520 aa15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 NDUFB9Q9Y6M9 179 aa15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 ADCY5O95622 1261 aa15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 BEND3Q5T5X7 828 aa15.42■□□□□ 0.06
HMGCS1-201ENST00000325110 USP31Q70CQ4 1352 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 SPATA31D1Q6ZQQ2 1576 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 NEXNQ0ZGT2 675 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.41■□□□□ 0.066e-7■■■□□ 15.3
HMGCS1-201ENST00000325110 RIMS1Q86UR5 1692 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 DDX58O95786 925 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 F13A1P00488 732 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 CSPP1Q1MSJ5 1256 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 EDC3Q96F86 508 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 CHMP4AQ9BY43 222 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 RBM8AQ9Y5S9 174 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 SALL3Q9BXA9 1300 aa15.41■□□□□ 0.06
HMGCS1-201ENST00000325110 LSG1Q9H089 658 aaKnown RBP15.4■□□□□ 0.06
HMGCS1-201ENST00000325110 PTPRUQ92729 1446 aa15.4■□□□□ 0.06
HMGCS1-201ENST00000325110 PLEKHG1Q9ULL1 1385 aa15.4■□□□□ 0.06
HMGCS1-201ENST00000325110 CKAP2LQ8IYA6 745 aa15.4■□□□□ 0.06
HMGCS1-201ENST00000325110 BICD2Q8TD16 824 aa15.4■□□□□ 0.06
HMGCS1-201ENST00000325110 NMIQ13287 307 aaPredicted RBP15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 BLOC1S2Q6QNY1 142 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 FBXW7Q969H0 707 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 DDX11Q96FC9 970 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 FAM177BA6PVY3 158 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 UBE2HP62256 183 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 IP6K1Q92551 441 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 ITSN1Q15811 1721 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 TECPR2O15040 1411 aa15.39■□□□□ 0.05
HMGCS1-201ENST00000325110 KDRP35968 1356 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 TSC1Q92574 1164 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 BICC1Q9H694 974 aaKnown RBP15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 RIMBP3CA6NJZ7 1639 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 RIMBP3BA6NNM3 1639 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 RIMBP3Q9UFD9 1639 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 H3BQV1 296 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 IFFO2Q5TF58 517 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 MYD88Q99836 296 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 HDAC5Q9UQL6 1122 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 RNF20Q5VTR2 975 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 ERC1Q8IUD2 1116 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 RAPGEF4Q8WZA2 1011 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 NEUROD6Q96NK8 337 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 LRRC2Q9BYS8 371 aa15.38■□□□□ 0.05
HMGCS1-201ENST00000325110 SUCLG2Q96I99 432 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 TLR7Q9NYK1 1049 aaKnown RBP15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 REREQ9P2R6 1566 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 ANKRD24Q8TF21 1146 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 PDLIM2Q96JY6 352 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 ATP5J2-PTCD1G3V325 749 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 GRM8O00222 908 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 PTCD1O75127 700 aaKnown RBP15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 KSR2Q6VAB6 950 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 EVI5LQ96CN4 794 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 ORAI2Q96SN7 254 aa15.37■□□□□ 0.05
HMGCS1-201ENST00000325110 KRT85P78386 507 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 POLA2Q14181 598 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 HS1BP3Q53T59 392 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 AKAP4Q5JQC9 854 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 CREB3L3Q68CJ9 461 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 ME3Q16798 604 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 FAM184AQ8NB25 1140 aa15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 EAF2Q96CJ1 260 aaPredicted RBP15.36■□□□□ 0.05
HMGCS1-201ENST00000325110 AOX1Q06278 1338 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 CCDC171Q6TFL3 1326 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 RNMTO43148 476 aaKnown RBP15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 PSMA5P28066 241 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 SSH2Q76I76 1423 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 AGLP35573 1532 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 TTC5Q8N0Z6 440 aa15.35■□□□□ 0.05
HMGCS1-201ENST00000325110 GCP02774 474 aa15.34■□□□□ 0.05
HMGCS1-201ENST00000325110 HYPKQ9NX55 129 aa15.34■□□□□ 0.05
HMGCS1-201ENST00000325110 KCNH5Q8NCM2 988 aa15.34■□□□□ 0.05
HMGCS1-201ENST00000325110 ZSCAN31Q96LW9 406 aaPredicted RBP15.34■□□□□ 0.05
HMGCS1-201ENST00000325110 TTC41PQ6P2S7 1318 aa15.34■□□□□ 0.05
HMGCS1-201ENST00000325110 A0A0D9SFI3 127 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms