RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 GADD45BO75293 160 aaPredicted RBP21.02■□□□□ 0.96
COL9A1-201ENST00000320755 PRPF40BQ6NWY9 871 aaKnown RBP21.02■□□□□ 0.96
COL9A1-201ENST00000320755 ECHDC1Q9NTX5 307 aa21.02■□□□□ 0.96
COL9A1-201ENST00000320755 SUCLG2Q96I99 432 aa21.01■□□□□ 0.95
COL9A1-201ENST00000320755 RIC3Q7Z5B4 369 aa21.01■□□□□ 0.95
COL9A1-201ENST00000320755 DDX17Q92841 729 aaKnown RBP21.01■□□□□ 0.95
COL9A1-201ENST00000320755 PROSER2Q86WR7 435 aaPredicted RBP21.01■□□□□ 0.95
COL9A1-201ENST00000320755 PPP1R9BQ96SB3 815 aa21.01■□□□□ 0.95
COL9A1-201ENST00000320755 BICC1Q9H694 974 aaKnown RBP21.01■□□□□ 0.95
COL9A1-201ENST00000320755 KCNJ4P48050 445 aa21■□□□□ 0.95
COL9A1-201ENST00000320755 GRM8O00222 908 aa20.99■□□□□ 0.95
COL9A1-201ENST00000320755 G3BP1Q13283 466 aaKnown RBP eCLIP20.99■□□□□ 0.95
COL9A1-201ENST00000320755 RUFY3Q7L099 469 aa20.99■□□□□ 0.95
COL9A1-201ENST00000320755 JAKMIP1Q96N16 626 aaKnown RBP20.99■□□□□ 0.95
COL9A1-201ENST00000320755 ADGRL3Q9HAR2 1447 aa20.99■□□□□ 0.95
COL9A1-201ENST00000320755 ALDH1L1O75891 902 aa20.99■□□□□ 0.95
COL9A1-201ENST00000320755 USP48Q86UV5 1035 aa20.99■□□□□ 0.95
COL9A1-201ENST00000320755 MBD3O95983 291 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 ADCK5Q3MIX3 580 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 LRSAM1Q6UWE0 723 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 GPATCH3Q96I76 525 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 HYPKQ9NX55 129 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 NFATC2IPQ8NCF5 419 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 WDR33Q9C0J8 1336 aaKnown RBP20.98■□□□□ 0.95
COL9A1-201ENST00000320755 TUBGCP6Q96RT7 1819 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 RAPGEF4Q8WZA2 1011 aa20.98■□□□□ 0.95
COL9A1-201ENST00000320755 TTC41PQ6P2S7 1318 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 DDX58O95786 925 aaKnown RBP20.97■□□□□ 0.95
COL9A1-201ENST00000320755 LINS1Q8NG48 757 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 RUFY2Q8WXA3 655 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 EAF2Q96CJ1 260 aaPredicted RBP20.97■□□□□ 0.95
COL9A1-201ENST00000320755 BOLA2Q9H3K6 86 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 LIMCH1Q9UPQ0 1083 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 LARGE1O95461 756 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 CCDC83Q8IWF9 413 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 KAZALD1Q96I82 304 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 FAM227BQ96M60 508 aa20.97■□□□□ 0.95
COL9A1-201ENST00000320755 TLR7Q9NYK1 1049 aaKnown RBP20.97■□□□□ 0.95
COL9A1-201ENST00000320755 CSB-PGBD3P0DP91 1061 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 SMC3Q9UQE7 1217 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 SASH1O94885 1247 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 MTX1Q13505 466 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 CABLES1Q8TDN4 633 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 TTC14Q96N46 770 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 CNPY2Q9Y2B0 182 aa20.96■□□□□ 0.95
COL9A1-201ENST00000320755 MSNP26038 577 aaKnown RBP20.96■□□□□ 0.95
COL9A1-201ENST00000320755 DDX21Q9NR30 783 aaKnown RBP eCLIP20.96■□□□□ 0.95
COL9A1-201ENST00000320755 ZNF790Q6PG37 636 aa20.95■□□□□ 0.94
COL9A1-201ENST00000320755 COPS6Q7L5N1 327 aa20.95■□□□□ 0.94
COL9A1-201ENST00000320755 ZSCAN30Q86W11 494 aa20.95■□□□□ 0.94
COL9A1-201ENST00000320755 ERC1Q8IUD2 1116 aa20.95■□□□□ 0.94
COL9A1-201ENST00000320755 CHD2O14647 1828 aaKnown RBP20.95■□□□□ 0.94
COL9A1-201ENST00000320755 SYT1P21579 422 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 XAGE3Q8WTP9 111 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 PDRG1Q9NUG6 133 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 IGKV5-2P06315 115 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 TCEANC2Q96MN5 208 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 MYD88Q99836 296 aa20.94■□□□□ 0.94
COL9A1-201ENST00000320755 CCDC9Q9Y3X0 531 aaKnown RBP20.93■□□□□ 0.94
COL9A1-201ENST00000320755 PDIA6Q15084 440 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 NECAB1Q8N987 351 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 MED1Q15648 1581 aaPredicted RBP20.93■□□□□ 0.94
COL9A1-201ENST00000320755 FIBPO43427 364 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 STX6O43752 255 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 NEXNQ0ZGT2 675 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 NMIQ13287 307 aaPredicted RBP20.93■□□□□ 0.94
COL9A1-201ENST00000320755 CHRNA2Q15822 529 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 EVI5LQ96CN4 794 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 HDAC5Q9UQL6 1122 aa20.93■□□□□ 0.94
COL9A1-201ENST00000320755 MPNDQ8N594 471 aa20.92■□□□□ 0.94
COL9A1-201ENST00000320755 EDC3Q96F86 508 aaKnown RBP20.92■□□□□ 0.94
COL9A1-201ENST00000320755 FSD1Q9BTV5 496 aa20.92■□□□□ 0.94
COL9A1-201ENST00000320755 COL9A3Q14050 684 aaPredicted RBP20.92■□□□□ 0.94
COL9A1-201ENST00000320755 IL17RAQ96F46 866 aa20.92■□□□□ 0.94
COL9A1-201ENST00000320755 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.92■□□□□ 0.94
COL9A1-201ENST00000320755 CYP46A1Q9Y6A2 500 aa20.92■□□□□ 0.94
COL9A1-201ENST00000320755 EPB41L2O43491 1005 aaKnown RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 ZSCAN22P10073 491 aaPredicted RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 EPHA10Q5JZY3 1008 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 ZNF496Q96IT1 587 aaPredicted RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 RBM8AQ9Y5S9 174 aaKnown RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 KDM3BQ7LBC6 1761 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 TCHHQ07283 1943 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 RPAP1Q9BWH6 1393 aaPredicted RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 ERBB3P21860 1342 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 NDUFB9Q9Y6M9 179 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 USP42Q9H9J4 1324 aaKnown RBP20.91■□□□□ 0.94
COL9A1-201ENST00000320755 TSPY26PQ9H489 355 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 USP16Q9Y5T5 823 aa20.91■□□□□ 0.94
COL9A1-201ENST00000320755 ZKSCAN1P17029 563 aaPredicted RBP20.9■□□□□ 0.94
COL9A1-201ENST00000320755 GJB2P29033 226 aa20.9■□□□□ 0.94
COL9A1-201ENST00000320755 LARP1Q6PKG0 1096 aaKnown RBP20.9■□□□□ 0.94
COL9A1-201ENST00000320755 SYAP1Q96A49 352 aaPredicted RBP20.9■□□□□ 0.94
COL9A1-201ENST00000320755 VPS37CA5D8V6 355 aaPredicted RBP20.9■□□□□ 0.94
COL9A1-201ENST00000320755 USP54Q70EL1 1684 aa20.9■□□□□ 0.94
COL9A1-201ENST00000320755 ATP5J2-PTCD1G3V325 749 aa20.89■□□□□ 0.94
COL9A1-201ENST00000320755 PTCD1O75127 700 aaKnown RBP20.89■□□□□ 0.94
COL9A1-201ENST00000320755 SLC52A2Q9HAB3 445 aa20.89■□□□□ 0.94
COL9A1-201ENST00000320755 CCDC171Q6TFL3 1326 aa20.89■□□□□ 0.93
COL9A1-201ENST00000320755 TATP17735 454 aaPredicted RBP20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms