RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 LRRFIP2Q9Y608 721 aaKnown RBP16.13■□□□□ 0.17
CPNE1-201ENST00000317677 PNMA6EA0A0J9YXQ4 647 aa16.12■□□□□ 0.17
CPNE1-201ENST00000317677 ITGB4P16144 1822 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 ERVV-2B6SEH9 535 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 HYPKQ9NX55 129 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 MAP3K2Q9Y2U5 619 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 TNS2Q63HR2 1409 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 SMARCA5O60264 1052 aaPredicted RBP16.11■□□□□ 0.17
CPNE1-201ENST00000317677 KSR2Q6VAB6 950 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 C16orf71Q8IYS4 520 aaPredicted RBP16.11■□□□□ 0.17
CPNE1-201ENST00000317677 TTC5Q8N0Z6 440 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 FMNL2Q96PY5 1086 aa16.11■□□□□ 0.17
CPNE1-201ENST00000317677 SPATA31A1Q5TZJ5 1347 aa16.1■□□□□ 0.17
CPNE1-201ENST00000317677 SNRPA1P09661 255 aaKnown RBP16.1■□□□□ 0.17
CPNE1-201ENST00000317677 NBPF7P0C2Y1 421 aaPredicted RBP16.1■□□□□ 0.17
CPNE1-201ENST00000317677 PIP4K2AP48426 406 aaPredicted RBP16.1■□□□□ 0.17
CPNE1-201ENST00000317677 ATP8B2P98198 1209 aa16.1■□□□□ 0.17
CPNE1-201ENST00000317677 OTUD7AQ8TE49 926 aaPredicted RBP16.1■□□□□ 0.17
CPNE1-201ENST00000317677 ISY1Q9ULR0 285 aaKnown RBP16.1■□□□□ 0.17
CPNE1-201ENST00000317677 UBTFL1P0CB47 393 aaPredicted RBP16.09■□□□□ 0.17
CPNE1-201ENST00000317677 PLEKHM2Q8IWE5 1019 aa16.09■□□□□ 0.17
CPNE1-201ENST00000317677 ARFGEF2Q9Y6D5 1785 aa16.09■□□□□ 0.17
CPNE1-201ENST00000317677 MYL6BP14649 208 aa16.08■□□□□ 0.16
CPNE1-201ENST00000317677 AIMP1Q12904 312 aaKnown RBP16.08■□□□□ 0.16
CPNE1-201ENST00000317677 SF3B2Q13435 895 aaKnown RBP16.08■□□□□ 0.16
CPNE1-201ENST00000317677 ESPNB1AK53 854 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 APBB1O00213 710 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 HMMRO75330 724 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 MRE11P49959 708 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 BECN1Q14457 450 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 CWF19L2Q2TBE0 894 aaKnown RBP16.07■□□□□ 0.16
CPNE1-201ENST00000317677 THSD7AQ9UPZ6 1657 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 TERF1P54274 439 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 BMP2KLQ5H9B9 411 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 XAGE3Q8WTP9 111 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 EXOC6BQ9Y2D4 811 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 TUBGCP6Q96RT7 1819 aa16.07■□□□□ 0.16
CPNE1-201ENST00000317677 GSPT1P15170 499 aaKnown RBP16.06■□□□□ 0.16
CPNE1-201ENST00000317677 MAP7D2Q96T17 732 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 ANTXR1Q9H6X2 564 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 NUP188Q5SRE5 1749 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 NBPF26B4DH59 902 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 ALDH1L1O75891 902 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 IGKV5-2P06315 115 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 NBPF14Q5TI25 921 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 NBPF10Q6P3W6 841 aaKnown RBP16.06■□□□□ 0.16
CPNE1-201ENST00000317677 BARGINQ6ZT62 677 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 COPS6Q7L5N1 327 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 NBPF15Q8N660 670 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 SSH3Q8TE77 659 aa16.06■□□□□ 0.16
CPNE1-201ENST00000317677 THRAP3Q9Y2W1 955 aaKnown RBP16.06■□□□□ 0.16
CPNE1-201ENST00000317677 POLA2Q14181 598 aa16.05■□□□□ 0.16
CPNE1-201ENST00000317677 AFDNP55196 1824 aaKnown RBP16.05■□□□□ 0.16
CPNE1-201ENST00000317677 IBTKQ9P2D0 1353 aaPredicted RBP16.04■□□□□ 0.16
CPNE1-201ENST00000317677 PPP1R42Q7Z4L9 355 aa16.04■□□□□ 0.16
CPNE1-201ENST00000317677 DOT1LQ8TEK3 1739 aa16.04■□□□□ 0.16
CPNE1-201ENST00000317677 LINS1Q8NG48 757 aa16.04■□□□□ 0.16
CPNE1-201ENST00000317677 SALL3Q9BXA9 1300 aa16.03■□□□□ 0.16
CPNE1-201ENST00000317677 EP400Q96L91 3159 aa16.03■□□□□ 0.16
CPNE1-201ENST00000317677 PIGBQ92521 554 aa16.03■□□□□ 0.16
CPNE1-201ENST00000317677 KAZALD1Q96I82 304 aa16.03■□□□□ 0.16
CPNE1-201ENST00000317677 UTYO14607 1347 aa16.03■□□□□ 0.16
CPNE1-201ENST00000317677 PTCD1O75127 700 aaKnown RBP16.02■□□□□ 0.16
CPNE1-201ENST00000317677 DDX58O95786 925 aaKnown RBP16.02■□□□□ 0.16
CPNE1-201ENST00000317677 TBC1D32Q96NH3 1257 aa16.02■□□□□ 0.16
CPNE1-201ENST00000317677 TTC22Q5TAA0 569 aa16.02■□□□□ 0.15
CPNE1-201ENST00000317677 RIC3Q7Z5B4 369 aa16.02■□□□□ 0.15
CPNE1-201ENST00000317677 ASAP1Q9ULH1 1129 aa16.02■□□□□ 0.15
CPNE1-201ENST00000317677 A1BGP04217 495 aa16.01■□□□□ 0.15
CPNE1-201ENST00000317677 METTL22Q9BUU2 404 aaPredicted RBP16.01■□□□□ 0.15
CPNE1-201ENST00000317677 TMOD3Q9NYL9 352 aa16.01■□□□□ 0.15
CPNE1-201ENST00000317677 NEURL1BA8MQ27 555 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 MTX1Q13505 466 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 ANKRD13DQ6ZTN6 518 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 SUCLG2Q96I99 432 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 MYD88Q99836 296 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 ERBB4Q15303 1308 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 BCL9O00512 1426 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 TJP1Q07157 1748 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 GRM8O00222 908 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 ATG3Q9NT62 314 aa16■□□□□ 0.15
CPNE1-201ENST00000317677 SRGAP3O43295 1099 aa15.99■□□□□ 0.15
CPNE1-201ENST00000317677 MFAP1P55081 439 aaKnown RBP15.99■□□□□ 0.15
CPNE1-201ENST00000317677 FAM196AQ6ZSG2 479 aa15.99■□□□□ 0.15
CPNE1-201ENST00000317677 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
CPNE1-201ENST00000317677 LRRCC1Q9C099 1032 aa15.99■□□□□ 0.15
CPNE1-201ENST00000317677 C9orf78Q9NZ63 289 aaPredicted RBP15.99■□□□□ 0.15
CPNE1-201ENST00000317677 BAG6P46379 1132 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 TBC1D9Q6ZT07 1266 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 TTLL7Q6ZT98 887 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 EXOC5O00471 708 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 PDE1AP54750 535 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 GCKRQ14397 625 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 SMAP1Q8IYB5 467 aaPredicted RBP15.98■□□□□ 0.15
CPNE1-201ENST00000317677 OSBPL3Q9H4L5 887 aa15.98■□□□□ 0.15
CPNE1-201ENST00000317677 MCM4P33991 863 aa15.97■□□□□ 0.15
CPNE1-201ENST00000317677 SLC4A9Q96Q91 983 aa15.97■□□□□ 0.15
CPNE1-201ENST00000317677 CDCA7Q9BWT1 371 aaPredicted RBP15.97■□□□□ 0.15
CPNE1-201ENST00000317677 A0A0U1RQG5 324 aaPredicted RBP15.96■□□□□ 0.15
CPNE1-201ENST00000317677 FAM182BQ5T319 152 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms