RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CNBD1Q8NA66 436 aa21.35■■□□□ 1.01
LSM1-201ENST00000311351 ZNF652Q9Y2D9 606 aa21.35■■□□□ 1.01
LSM1-201ENST00000311351 HLFQ16534 295 aa21.34■■□□□ 1.01
LSM1-201ENST00000311351 CLEC4GQ6UXB4 293 aa21.34■■□□□ 1.01
LSM1-201ENST00000311351 TTLL7Q6ZT98 887 aa21.34■■□□□ 1.01
LSM1-201ENST00000311351 C2CD5Q86YS7 1000 aa21.34■■□□□ 1.01
LSM1-201ENST00000311351 CHL1O00533 1208 aa21.33■■□□□ 1.01
LSM1-201ENST00000311351 EIF2S2P20042 333 aaKnown RBP21.33■■□□□ 1.01
LSM1-201ENST00000311351 ARHGAP27Q6ZUM4 889 aa21.33■■□□□ 1.01
LSM1-201ENST00000311351 NPHP1O15259 732 aa21.32■■□□□ 1
LSM1-201ENST00000311351 ANP32CO43423 234 aa21.32■■□□□ 1
LSM1-201ENST00000311351 NIP7Q9Y221 180 aaKnown RBP eCLIP21.32■■□□□ 1
LSM1-201ENST00000311351 ERBB4Q15303 1308 aa21.31■■□□□ 1
LSM1-201ENST00000311351 ANXA1P04083 346 aa21.31■■□□□ 1
LSM1-201ENST00000311351 PROSER3Q2NL68 480 aa21.31■■□□□ 1
LSM1-201ENST00000311351 NECTIN2Q92692 538 aa21.31■■□□□ 1
LSM1-201ENST00000311351 BRIP1Q9BX63 1249 aa21.31■■□□□ 1
LSM1-201ENST00000311351 MAP3K15Q6ZN16 1313 aa21.3■■□□□ 1
LSM1-201ENST00000311351 SENP3-EIF4A1A0A087X0R7 540 aa21.3■■□□□ 1
LSM1-201ENST00000311351 FAM177BA6PVY3 158 aa21.3■■□□□ 1
LSM1-201ENST00000311351 PDIA6Q15084 440 aa21.3■■□□□ 1
LSM1-201ENST00000311351 NBPF5PQ86XG9 351 aaPredicted RBP21.3■■□□□ 1
LSM1-201ENST00000311351 ZBTB3Q9H5J0 574 aa21.3■■□□□ 1
LSM1-201ENST00000311351 MRS2Q9HD23 443 aa21.3■■□□□ 1
LSM1-201ENST00000311351 TNRC6CQ9HCJ0 1690 aaKnown RBP21.3■■□□□ 1
LSM1-201ENST00000311351 SBF1O95248 1867 aa21.29■■□□□ 1
LSM1-201ENST00000311351 ARFGEF2Q9Y6D5 1785 aa21.29■■□□□ 1
LSM1-201ENST00000311351 H0YIN7 160 aa21.29■■□□□ 1
LSM1-201ENST00000311351 RGL2O15211 777 aa21.29■■□□□ 1
LSM1-201ENST00000311351 ST5P78524 1137 aa21.29■■□□□ 1
LSM1-201ENST00000311351 KIF6Q6ZMV9 814 aa21.29■■□□□ 1
LSM1-201ENST00000311351 LRP10Q7Z4F1 713 aa21.29■■□□□ 1
LSM1-201ENST00000311351 PDE6BP35913 854 aa21.28■■□□□ 1
LSM1-201ENST00000311351 ZNF526Q8TF50 670 aaPredicted RBP21.28■■□□□ 1
LSM1-201ENST00000311351 ANKRD36CQ5JPF3 1778 aa21.28■■□□□ 1
LSM1-201ENST00000311351 ERVV-1B6SEH8 477 aa21.27■■□□□ 1
LSM1-201ENST00000311351 TTLL6Q8N841 843 aa21.27■■□□□ 1
LSM1-201ENST00000311351 ZNF622Q969S3 477 aaKnown RBP eCLIP21.27■■□□□ 1
LSM1-201ENST00000311351 CFAP44Q96MT7 982 aa21.27■■□□□ 1
LSM1-201ENST00000311351 MBIPQ9NS73 344 aa21.27■■□□□ 1
LSM1-201ENST00000311351 SLX4Q8IY92 1834 aa21.26■□□□□ 0.99
LSM1-201ENST00000311351 UBN2Q6ZU65 1347 aa21.26■□□□□ 0.99
LSM1-201ENST00000311351 ABCC12Q96J65 1359 aa21.25■□□□□ 0.99
LSM1-201ENST00000311351 ZNF853P0CG23 659 aa21.25■□□□□ 0.99
LSM1-201ENST00000311351 GPTP24298 496 aa21.25■□□□□ 0.99
LSM1-201ENST00000311351 RASSF7Q02833 373 aa21.25■□□□□ 0.99
LSM1-201ENST00000311351 IFT57Q9NWB7 429 aa21.24■□□□□ 0.99
LSM1-201ENST00000311351 CCDC88AQ3V6T2 1871 aa21.24■□□□□ 0.99
LSM1-201ENST00000311351 SRGNP10124 158 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 HDGFL1Q5TGJ6 251 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 C9orf131Q5VYM1 1079 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 TPTE2Q6XPS3 522 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 CHPF2Q9P2E5 772 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 ZNF219Q9P2Y4 722 aaPredicted RBP21.23■□□□□ 0.99
LSM1-201ENST00000311351 PDZRN3Q9UPQ7 1066 aa21.23■□□□□ 0.99
LSM1-201ENST00000311351 FER1L6Q2WGJ9 1857 aa21.22■□□□□ 0.99
LSM1-201ENST00000311351 TIAM2Q8IVF5 1701 aa21.22■□□□□ 0.99
LSM1-201ENST00000311351 GIGYF2Q6Y7W6 1299 aaKnown RBP21.22■□□□□ 0.99
LSM1-201ENST00000311351 NUTM1Q86Y26 1132 aa21.22■□□□□ 0.99
LSM1-201ENST00000311351 GPBP1L1Q9HC44 474 aaPredicted RBP21.22■□□□□ 0.99
LSM1-201ENST00000311351 GNAI1P63096 354 aa21.21■□□□□ 0.99
LSM1-201ENST00000311351 CALD1Q05682 793 aaKnown RBP21.21■□□□□ 0.99
LSM1-201ENST00000311351 AIMP1Q12904 312 aaKnown RBP21.21■□□□□ 0.99
LSM1-201ENST00000311351 DUSP27Q5VZP5 1158 aa21.21■□□□□ 0.99
LSM1-201ENST00000311351 XAGE3Q8WTP9 111 aa21.21■□□□□ 0.99
LSM1-201ENST00000311351 DDX21Q9NR30 783 aaKnown RBP eCLIP21.21■□□□□ 0.99
LSM1-201ENST00000311351 RNF181Q9P0P0 153 aa21.21■□□□□ 0.99
LSM1-201ENST00000311351 HOXB7P09629 217 aa21.2■□□□□ 0.98
LSM1-201ENST00000311351 STYK1Q6J9G0 422 aa21.2■□□□□ 0.98
LSM1-201ENST00000311351 COPS6Q7L5N1 327 aa21.2■□□□□ 0.98
LSM1-201ENST00000311351 ZNF34Q8IZ26 560 aa21.2■□□□□ 0.98
LSM1-201ENST00000311351 MASTLQ96GX5 879 aa21.2■□□□□ 0.98
LSM1-201ENST00000311351 IBTKQ9P2D0 1353 aaPredicted RBP21.2■□□□□ 0.98
LSM1-201ENST00000311351 NFKBIEO00221 500 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 C21orf2O43822 256 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 GTF2E1P29083 439 aaPredicted RBP21.19■□□□□ 0.98
LSM1-201ENST00000311351 PRELPP51888 382 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 ERFEQ4G0M1 354 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 SUSD4Q5VX71 490 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 PRPF40BQ6NWY9 871 aaKnown RBP21.19■□□□□ 0.98
LSM1-201ENST00000311351 NYXQ9GZU5 481 aa21.19■□□□□ 0.98
LSM1-201ENST00000311351 NTSR2O95665 410 aa21.18■□□□□ 0.98
LSM1-201ENST00000311351 CNKSR1Q969H4 720 aa21.18■□□□□ 0.98
LSM1-201ENST00000311351 KLRG2A4D1S0 409 aaPredicted RBP21.17■□□□□ 0.98
LSM1-201ENST00000311351 ELL2O00472 640 aaPredicted RBP21.17■□□□□ 0.98
LSM1-201ENST00000311351 RIC1Q4ADV7 1423 aa21.17■□□□□ 0.98
LSM1-201ENST00000311351 NPR1P16066 1061 aa21.16■□□□□ 0.98
LSM1-201ENST00000311351 C1QTNF8P60827 252 aa21.16■□□□□ 0.98
LSM1-201ENST00000311351 WWC1Q8IX03 1113 aa21.16■□□□□ 0.98
LSM1-201ENST00000311351 TSR2Q969E8 191 aaKnown RBP21.16■□□□□ 0.98
LSM1-201ENST00000311351 LAMB2P55268 1798 aa21.15■□□□□ 0.98
LSM1-201ENST00000311351 CCDC27Q2M243 656 aa21.15■□□□□ 0.98
LSM1-201ENST00000311351 C8orf58Q8NAV2 365 aa21.15■□□□□ 0.98
LSM1-201ENST00000311351 DBF4Q9UBU7 674 aaPredicted RBP21.15■□□□□ 0.98
LSM1-201ENST00000311351 DICER1Q9UPY3 1922 aaKnown RBP21.15■□□□□ 0.98
LSM1-201ENST00000311351 LMNB1P20700 586 aa21.14■□□□□ 0.97
LSM1-201ENST00000311351 PARP10Q53GL7 1025 aa21.14■□□□□ 0.97
LSM1-201ENST00000311351 PPP1R42Q7Z4L9 355 aa21.13■□□□□ 0.97
LSM1-201ENST00000311351 SALL2Q9Y467 1007 aaPredicted RBP21.13■□□□□ 0.97
LSM1-201ENST00000311351 CRY2Q49AN0 593 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms