RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 HDAC5Q9UQL6 1122 aa19.34■□□□□ 0.69
LSM6-201ENST00000296581 THSD7AQ9UPZ6 1657 aa19.34■□□□□ 0.69
LSM6-201ENST00000296581 TJP1Q07157 1748 aa19.34■□□□□ 0.69
LSM6-201ENST00000296581 DNAJC10Q8IXB1 793 aa19.34■□□□□ 0.69
LSM6-201ENST00000296581 C9orf78Q9NZ63 289 aaPredicted RBP19.34■□□□□ 0.69
LSM6-201ENST00000296581 NOP58Q9Y2X3 529 aaKnown RBP19.34■□□□□ 0.69
LSM6-201ENST00000296581 AFDNP55196 1824 aaKnown RBP19.33■□□□□ 0.69
LSM6-201ENST00000296581 NEURL1BA8MQ27 555 aa19.33■□□□□ 0.68
LSM6-201ENST00000296581 GRM8O00222 908 aa19.33■□□□□ 0.68
LSM6-201ENST00000296581 POLA2Q14181 598 aa19.33■□□□□ 0.68
LSM6-201ENST00000296581 SYTL4Q96C24 671 aaPredicted RBP19.33■□□□□ 0.68
LSM6-201ENST00000296581 MYD88Q99836 296 aa19.32■□□□□ 0.68
LSM6-201ENST00000296581 RBM42Q9BTD8 480 aaKnown RBP19.32■□□□□ 0.68
LSM6-201ENST00000296581 RTN4Q9NQC3 1192 aaKnown RBP19.32■□□□□ 0.68
LSM6-201ENST00000296581 EIF5BO60841 1220 aaKnown RBP19.32■□□□□ 0.68
LSM6-201ENST00000296581 MTX1Q13505 466 aa19.32■□□□□ 0.68
LSM6-201ENST00000296581 SLC4A9Q96Q91 983 aa19.32■□□□□ 0.68
LSM6-201ENST00000296581 CICQ96RK0 1608 aaPredicted RBP19.31■□□□□ 0.68
LSM6-201ENST00000296581 PPP1R42Q7Z4L9 355 aa19.31■□□□□ 0.68
LSM6-201ENST00000296581 STARD3NLO95772 234 aa19.31■□□□□ 0.68
LSM6-201ENST00000296581 GCKRQ14397 625 aa19.31■□□□□ 0.68
LSM6-201ENST00000296581 MEX3CQ5U5Q3 659 aaKnown RBP19.3■□□□□ 0.68
LSM6-201ENST00000296581 TTLL7Q6ZT98 887 aa19.3■□□□□ 0.68
LSM6-201ENST00000296581 ZBTB47Q9UFB7 747 aaPredicted RBP19.3■□□□□ 0.68
LSM6-201ENST00000296581 CYP19A1P11511 503 aaPredicted RBP19.28■□□□□ 0.68
LSM6-201ENST00000296581 ACSBG1Q96GR2 724 aa19.28■□□□□ 0.68
LSM6-201ENST00000296581 EXOC6BQ9Y2D4 811 aa19.28■□□□□ 0.68
LSM6-201ENST00000296581 PLEKHM2Q8IWE5 1019 aa19.28■□□□□ 0.68
LSM6-201ENST00000296581 AFF2P51816 1311 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 SRGAP3O43295 1099 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 BMP2KLQ5H9B9 411 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 KAZALD1Q96I82 304 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 SUCLG2Q96I99 432 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 ATRNO75882 1429 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 COL15A1P39059 1388 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 PKNOX2Q96KN3 472 aa19.27■□□□□ 0.68
LSM6-201ENST00000296581 SMARCA5O60264 1052 aaPredicted RBP19.26■□□□□ 0.67
LSM6-201ENST00000296581 GJD4Q96KN9 370 aaPredicted RBP19.26■□□□□ 0.67
LSM6-201ENST00000296581 APBB1O00213 710 aa19.25■□□□□ 0.67
LSM6-201ENST00000296581 C16orf71Q8IYS4 520 aaPredicted RBP19.25■□□□□ 0.67
LSM6-201ENST00000296581 LRRCC1Q9C099 1032 aa19.25■□□□□ 0.67
LSM6-201ENST00000296581 ZNF831Q5JPB2 1677 aa19.25■□□□□ 0.67
LSM6-201ENST00000296581 RAB11FIP3O75154 756 aa19.25■□□□□ 0.67
LSM6-201ENST00000296581 RREB1Q92766 1687 aa19.24■□□□□ 0.67
LSM6-201ENST00000296581 ATP5J2-PTCD1G3V325 749 aa19.24■□□□□ 0.67
LSM6-201ENST00000296581 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 ZBTB3Q9H5J0 574 aa19.23■□□□□ 0.67
LSM6-201ENST00000296581 BICC1Q9H694 974 aaKnown RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 ONECUT3O60422 494 aaPredicted RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 SURF6O75683 361 aaKnown RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 ANP32AP39687 249 aaKnown RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 OTUD7AQ8TE49 926 aaPredicted RBP19.23■□□□□ 0.67
LSM6-201ENST00000296581 PALLDQ8WX93 1383 aa19.23■□□□□ 0.67
LSM6-201ENST00000296581 KCNQ2O43526 872 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 CASP7P55210 303 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 RTL5Q5HYW3 569 aaPredicted RBP19.22■□□□□ 0.67
LSM6-201ENST00000296581 TRPC5Q9UL62 973 aaPredicted RBP19.22■□□□□ 0.67
LSM6-201ENST00000296581 SALL3Q9BXA9 1300 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 LOC102724428A0A0B4J2F2 783 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 A0A0G2JS52 829 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 SIK1P57059 783 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 HSP90AB4PQ58FF6 505 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 KIF6Q6ZMV9 814 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 ZBTB1Q9Y2K1 713 aa19.22■□□□□ 0.67
LSM6-201ENST00000296581 NHSQ6T4R5 1651 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 A0A087WZG4 1122 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 H7C1W4 665 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 SEC24BO95487 1268 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 IL6STP40189 918 aaPredicted RBP19.21■□□□□ 0.67
LSM6-201ENST00000296581 TTC22Q5TAA0 569 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 CCDC191Q8NCU4 936 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 ISCA1Q9BUE6 129 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 OSBPL3Q9H4L5 887 aa19.21■□□□□ 0.67
LSM6-201ENST00000296581 CWC25Q9NXE8 425 aaPredicted RBP19.21■□□□□ 0.67
LSM6-201ENST00000296581 MAP3K15Q6ZN16 1313 aa19.2■□□□□ 0.66
LSM6-201ENST00000296581 TRIM28Q13263 835 aaKnown RBP19.2■□□□□ 0.66
LSM6-201ENST00000296581 TCIRG1Q13488 830 aa19.2■□□□□ 0.66
LSM6-201ENST00000296581 UBE3BQ7Z3V4 1068 aa19.2■□□□□ 0.66
LSM6-201ENST00000296581 COL5A3P25940 1745 aaPredicted RBP19.2■□□□□ 0.66
LSM6-201ENST00000296581 GSPT1P15170 499 aaKnown RBP19.2■□□□□ 0.66
LSM6-201ENST00000296581 ATP6V1AP38606 617 aa19.2■□□□□ 0.66
LSM6-201ENST00000296581 RABL6Q3YEC7 729 aaPredicted RBP19.2■□□□□ 0.66
LSM6-201ENST00000296581 EPHA10Q5JZY3 1008 aa19.2■□□□□ 0.66
LSM6-201ENST00000296581 NPM2Q86SE8 214 aaKnown RBP19.2■□□□□ 0.66
LSM6-201ENST00000296581 ANKRD36CQ5JPF3 1778 aa19.19■□□□□ 0.66
LSM6-201ENST00000296581 RHPN1Q8TCX5 695 aa19.19■□□□□ 0.66
LSM6-201ENST00000296581 KIF1BPQ96EK5 621 aa19.19■□□□□ 0.66
LSM6-201ENST00000296581 ZNF330Q9Y3S2 320 aaPredicted RBP19.19■□□□□ 0.66
LSM6-201ENST00000296581 PDE1AP54750 535 aa19.18■□□□□ 0.66
LSM6-201ENST00000296581 ITPK1Q13572 414 aa19.18■□□□□ 0.66
LSM6-201ENST00000296581 INTS5Q6P9B9 1019 aaKnown RBP19.18■□□□□ 0.66
LSM6-201ENST00000296581 GIGYF2Q6Y7W6 1299 aaKnown RBP19.18■□□□□ 0.66
LSM6-201ENST00000296581 BTAF1O14981 1849 aa19.18■□□□□ 0.66
LSM6-201ENST00000296581 TUBGCP6Q96RT7 1819 aa19.17■□□□□ 0.66
LSM6-201ENST00000296581 CCDC87Q9NVE4 849 aa19.17■□□□□ 0.66
LSM6-201ENST00000296581 MYH14Q7Z406 1995 aaKnown RBP19.17■□□□□ 0.66
LSM6-201ENST00000296581 EIF5P55010 431 aaKnown RBP19.17■□□□□ 0.66
LSM6-201ENST00000296581 JARID2Q92833 1246 aaPredicted RBP19.17■□□□□ 0.66
LSM6-201ENST00000296581 STAP2Q9UGK3 403 aa19.17■□□□□ 0.66
LSM6-201ENST00000296581 NUP98P52948 1817 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms