RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 ELP1O95163 1332 aa13.52□□□□□ -0.25
SNIP1-201ENST00000296215 CLCN6P51797 869 aa13.52□□□□□ -0.25
SNIP1-201ENST00000296215 TRIM29Q14134 588 aa13.52□□□□□ -0.25
SNIP1-201ENST00000296215 CCDC38Q502W7 563 aa13.52□□□□□ -0.25
SNIP1-201ENST00000296215 SDCCAG8Q86SQ7 713 aaPredicted RBP13.51□□□□□ -0.25
SNIP1-201ENST00000296215 MYLK4Q86YV6 388 aaPredicted RBP13.51□□□□□ -0.25
SNIP1-201ENST00000296215 DYTNA2CJ06 578 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 PPFIA4O75335 1185 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 TUBBP07437 444 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 NAA30Q147X3 362 aaPredicted RBP13.51□□□□□ -0.25
SNIP1-201ENST00000296215 TMC6Q7Z403 805 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 BCAS4Q8TDM0 211 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 CAVIN2O95810 425 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 TPP2P29144 1249 aaPredicted RBP13.51□□□□□ -0.25
SNIP1-201ENST00000296215 CAPRIN2Q6IMN6 1127 aaKnown RBP13.51□□□□□ -0.25
SNIP1-201ENST00000296215 OPA1O60313 960 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 ADAMTS8Q9UP79 889 aa13.51□□□□□ -0.25
SNIP1-201ENST00000296215 ERC2O15083 957 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 CRYMQ14894 314 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 SPECC1LQ69YQ0 1117 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 RINLQ6ZS11 566 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 CNNM3Q8NE01 707 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 PLEKHA4Q9H4M7 779 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 RRP7AQ9Y3A4 280 aaKnown RBP13.5□□□□□ -0.25
SNIP1-201ENST00000296215 LUC7L3O95232 432 aaKnown RBP13.5□□□□□ -0.25
SNIP1-201ENST00000296215 TSPY4P0CV99 314 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 TSPY10P0CW01 314 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 PDCP20941 246 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 SLC30A9Q6PML9 568 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 PNMA8AQ86V59 439 aaPredicted RBP13.5□□□□□ -0.25
SNIP1-201ENST00000296215 LUC7L2Q9Y383 392 aaKnown RBP13.5□□□□□ -0.25
SNIP1-201ENST00000296215 TUBB4BP68371 445 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 CFAP100Q494V2 611 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 SIRT1Q96EB6 747 aa13.5□□□□□ -0.25
SNIP1-201ENST00000296215 PAIP2BQ9ULR5 123 aaKnown RBP13.5□□□□□ -0.25
SNIP1-201ENST00000296215 GNPTABQ3T906 1256 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 USP48Q86UV5 1035 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 RMDN2Q96LZ7 410 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 CTAGE15A4D2H0 777 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 A6NNZ2 444 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 CTAGE8P0CG41 777 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 TUBB8Q3ZCM7 444 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 CTAGE6Q86UF2 777 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 CTAGE4Q8IX94 777 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 RASSF8Q8NHQ8 419 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 KCNA4P22459 653 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 KIF9Q9HAQ2 790 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 CCDC160A6NGH7 325 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 SEC31AO94979 1220 aaKnown RBP13.49□□□□□ -0.25
SNIP1-201ENST00000296215 PRPHP41219 470 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 SLFNL1Q499Z3 407 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 SPATA32Q96LK8 384 aa13.49□□□□□ -0.25
SNIP1-201ENST00000296215 ZCCHC17Q9NP64 241 aaKnown RBP13.49□□□□□ -0.25
SNIP1-201ENST00000296215 PAX7P23759 505 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 POLE2P56282 527 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 GPR161Q8N6U8 529 aaKnown RBP13.48□□□□□ -0.25
SNIP1-201ENST00000296215 GOLGA6CA6NDK9 693 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 GOLGA6DP0CG33 693 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 PRPF4BQ13523 1007 aaKnown RBP13.48□□□□□ -0.25
SNIP1-201ENST00000296215 CCDC6Q16204 474 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 PPFIBP1Q86W92 1011 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 SPATS2Q86XZ4 545 aaKnown RBP13.48□□□□□ -0.25
SNIP1-201ENST00000296215 GOLGA6AQ9NYA3 693 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 ZNF777Q9ULD5 760 aaPredicted RBP13.48□□□□□ -0.25
SNIP1-201ENST00000296215 SPATA24Q86W54 205 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 PDE11AQ9HCR9 933 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 KDM2BQ8NHM5 1336 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 ZBTB17Q13105 803 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 ANO6Q4KMQ2 910 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 GBP7Q8N8V2 638 aaPredicted RBP13.48□□□□□ -0.25
SNIP1-201ENST00000296215 FBF1Q8TES7 1133 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 FAM114A2Q9NRY5 505 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 STAG3Q9UJ98 1225 aa13.48□□□□□ -0.25
SNIP1-201ENST00000296215 AP1G2O75843 785 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 RHOXF2BP0C7M4 288 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 PSMC4P43686 418 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 RBM5P52756 815 aaKnown RBP eCLIP13.47□□□□□ -0.25
SNIP1-201ENST00000296215 SUGP1Q8IWZ8 645 aaKnown RBP13.47□□□□□ -0.25
SNIP1-201ENST00000296215 RHOXF2Q9BQY4 288 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 ANO10Q9NW15 660 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 SOGA1O94964 1423 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 HSF2BPO75031 334 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 LAMB3Q13751 1172 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 SPECC1Q5M775 1068 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 WDR78Q5VTH9 848 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 KLHL10Q6JEL2 608 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 CHD1LQ86WJ1 897 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 CCDC65Q8IXS2 484 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 IRF6O14896 467 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 LRRFIP1Q32MZ4 808 aaKnown RBP13.47□□□□□ -0.25
SNIP1-201ENST00000296215 RBM26Q5T8P6 1007 aaKnown RBP13.47□□□□□ -0.25
SNIP1-201ENST00000296215 HDGFL1Q5TGJ6 251 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 MORC1Q86VD1 984 aa13.47□□□□□ -0.25
SNIP1-201ENST00000296215 LRMPQ12912 555 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 MPHOSPH9Q99550 1183 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 CETN3O15182 167 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 CSB-PGBD3P0DP91 1061 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 FILIP1LQ4L180 1135 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms