RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.4■■□□□ 1.5
VPS53-201ENST00000291074 GOLGA6L22H0YM25 854 aa24.4■■□□□ 1.5
VPS53-201ENST00000291074 SKOR2Q2VWA4 1001 aaPredicted RBP24.4■■□□□ 1.5
VPS53-201ENST00000291074 CADPS2Q86UW7 1296 aa24.4■■□□□ 1.5
VPS53-201ENST00000291074 CLASRPQ8N2M8 674 aaKnown RBP24.4■■□□□ 1.5
VPS53-201ENST00000291074 XAGE3Q8WTP9 111 aa24.4■■□□□ 1.5
VPS53-201ENST00000291074 SGSM2O43147 1006 aa24.39■■□□□ 1.5
VPS53-201ENST00000291074 USP42Q9H9J4 1324 aaKnown RBP24.39■■□□□ 1.5
VPS53-201ENST00000291074 PTMSP20962 102 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 CWC27Q6UX04 472 aaKnown RBP24.38■■□□□ 1.49
VPS53-201ENST00000291074 CHAMP1Q96JM3 812 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 COPS6Q7L5N1 327 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 USP16Q9Y5T5 823 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 UTYO14607 1347 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 SPATA31A3Q5VYP0 1347 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 HSPA4P34932 840 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 GAS2L3Q86XJ1 694 aa24.38■■□□□ 1.49
VPS53-201ENST00000291074 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.38■■□□□ 1.491e-6■■□□□ 14.2
VPS53-201ENST00000291074 TTC41PQ6P2S7 1318 aa24.37■■□□□ 1.49
VPS53-201ENST00000291074 FOXD4L5Q5VV16 416 aaPredicted RBP24.37■■□□□ 1.49
VPS53-201ENST00000291074 FOXD4L4Q8WXT5 416 aaPredicted RBP24.37■■□□□ 1.49
VPS53-201ENST00000291074 GLRX3O76003 335 aaKnown RBP24.37■■□□□ 1.49
VPS53-201ENST00000291074 PKD1L3Q7Z443 1732 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 RAD50Q92878 1312 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 AACSQ86V21 672 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 MYD88Q99836 296 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 SIL1Q9H173 461 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 GRPEL1Q9HAV7 217 aa24.36■■□□□ 1.49
VPS53-201ENST00000291074 DDX49Q9Y6V7 483 aaKnown RBP24.36■■□□□ 1.49
VPS53-201ENST00000291074 XIRP1Q702N8 1843 aaKnown RBP24.35■■□□□ 1.49
VPS53-201ENST00000291074 NEURL1BA8MQ27 555 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 SASH1O94885 1247 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 IFIT2P09913 472 aaKnown RBP24.35■■□□□ 1.49
VPS53-201ENST00000291074 MCM2P49736 904 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 LARP1Q6PKG0 1096 aaKnown RBP24.35■■□□□ 1.49
VPS53-201ENST00000291074 KLHDC4Q8TBB5 520 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 JARID2Q92833 1246 aaPredicted RBP24.35■■□□□ 1.49
VPS53-201ENST00000291074 DCAF5Q96JK2 942 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 LSG1Q9H089 658 aaKnown RBP24.35■■□□□ 1.49
VPS53-201ENST00000291074 ECHDC1Q9NTX5 307 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 TTC5Q8N0Z6 440 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 IL17RAQ96F46 866 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 MRC1P22897 1456 aa24.35■■□□□ 1.49
VPS53-201ENST00000291074 MRE11P49959 708 aa24.34■■□□□ 1.49
VPS53-201ENST00000291074 ERC1Q8IUD2 1116 aa24.34■■□□□ 1.49
VPS53-201ENST00000291074 HDAC5Q9UQL6 1122 aa24.34■■□□□ 1.49
VPS53-201ENST00000291074 ABCC6O95255 1503 aa24.34■■□□□ 1.49
VPS53-201ENST00000291074 NEXNQ0ZGT2 675 aa24.33■■□□□ 1.49
VPS53-201ENST00000291074 CUL4AQ13619 759 aa24.33■■□□□ 1.49
VPS53-201ENST00000291074 EPHA10Q5JZY3 1008 aa24.33■■□□□ 1.49
VPS53-201ENST00000291074 LRP10Q7Z4F1 713 aa24.33■■□□□ 1.49
VPS53-201ENST00000291074 SNRPA1P09661 255 aaKnown RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 GCKRQ14397 625 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 RASEFQ8IZ41 740 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 EAF2Q96CJ1 260 aaPredicted RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 LMBRD1Q9NUN5 540 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 SNX14Q9Y5W7 946 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 KLHL40Q2TBA0 621 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 METTL22Q9BUU2 404 aaPredicted RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 CCDC8Q9H0W5 538 aaPredicted RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 DIAPH3Q9NSV4 1193 aa24.32■■□□□ 1.48
VPS53-201ENST00000291074 TLR7Q9NYK1 1049 aaKnown RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 AFDNP55196 1824 aaKnown RBP24.32■■□□□ 1.48
VPS53-201ENST00000291074 G3BP1Q13283 466 aaKnown RBP eCLIP24.31■■□□□ 1.48
VPS53-201ENST00000291074 CABP4P57796 275 aa24.31■■□□□ 1.48
VPS53-201ENST00000291074 EPB41L2O43491 1005 aaKnown RBP24.3■■□□□ 1.48
VPS53-201ENST00000291074 ANKRD13DQ6ZTN6 518 aa24.3■■□□□ 1.48
VPS53-201ENST00000291074 GPATCH3Q96I76 525 aa24.3■■□□□ 1.48
VPS53-201ENST00000291074 FMNL2Q96PY5 1086 aa24.3■■□□□ 1.48
VPS53-201ENST00000291074 BRINP3Q76B58 766 aa24.3■■□□□ 1.48
VPS53-201ENST00000291074 CPDO75976 1380 aa24.3■■□□□ 1.48
VPS53-201ENST00000291074 KIAA1211Q6ZU35 1233 aa24.29■■□□□ 1.48
VPS53-201ENST00000291074 GLI3P10071 1580 aa24.29■■□□□ 1.48
VPS53-201ENST00000291074 NCLP19338 710 aaKnown RBP24.28■■□□□ 1.48
VPS53-201ENST00000291074 ARFGEF2Q9Y6D5 1785 aa24.28■■□□□ 1.48
VPS53-201ENST00000291074 PRPF40AO75400 957 aaKnown RBP24.28■■□□□ 1.48
VPS53-201ENST00000291074 PTH1RQ03431 593 aa24.28■■□□□ 1.48
VPS53-201ENST00000291074 LARP6Q9BRS8 491 aaKnown RBP24.28■■□□□ 1.48
VPS53-201ENST00000291074 DNAJC5Q9H3Z4 198 aa24.27■■□□□ 1.48
VPS53-201ENST00000291074 ATP5J2-PTCD1G3V325 749 aa24.27■■□□□ 1.48
VPS53-201ENST00000291074 PTCD1O75127 700 aaKnown RBP24.27■■□□□ 1.48
VPS53-201ENST00000291074 ISY1Q9ULR0 285 aaKnown RBP24.27■■□□□ 1.48
VPS53-201ENST00000291074 CPA1P15085 419 aa24.26■■□□□ 1.47
VPS53-201ENST00000291074 INTS4Q96HW7 963 aaKnown RBP24.26■■□□□ 1.47
VPS53-201ENST00000291074 CAVIN1Q6NZI2 390 aaKnown RBP24.26■■□□□ 1.47
VPS53-201ENST00000291074 PRDM11Q9NQV5 511 aa24.26■■□□□ 1.47
VPS53-201ENST00000291074 BRD1O95696 1058 aa24.25■■□□□ 1.47
VPS53-201ENST00000291074 UBE3BQ7Z3V4 1068 aa24.25■■□□□ 1.47
VPS53-201ENST00000291074 EVI5LQ96CN4 794 aa24.25■■□□□ 1.47
VPS53-201ENST00000291074 LAMB4A4D0S4 1761 aa24.25■■□□□ 1.47
VPS53-201ENST00000291074 FAM43AQ8N2R8 423 aa24.25■■□□□ 1.47
VPS53-201ENST00000291074 TTC14Q96N46 770 aa24.24■■□□□ 1.47
VPS53-201ENST00000291074 PARP4Q9UKK3 1724 aaKnown RBP24.24■■□□□ 1.47
VPS53-201ENST00000291074 TOM1L2Q6ZVM7 507 aa24.24■■□□□ 1.47
VPS53-201ENST00000291074 RUFY2Q8WXA3 655 aa24.24■■□□□ 1.47
VPS53-201ENST00000291074 FAM227BQ96M60 508 aa24.24■■□□□ 1.47
VPS53-201ENST00000291074 BOLA2Q9H3K6 86 aa24.24■■□□□ 1.47
VPS53-201ENST00000291074 AK2P54819 239 aa24.23■■□□□ 1.47
VPS53-201ENST00000291074 GPT2Q8TD30 523 aa24.23■■□□□ 1.47
VPS53-201ENST00000291074 PRPF40BQ6NWY9 871 aaKnown RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms